RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MRPL17Q9NRX2 175 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 CREBZFQ9NS37 354 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 EHD3Q9NZN3 535 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 DKK3Q9UBP4 350 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 RUVBL1Q9Y265 456 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 MAN2B2Q9Y2E5 1009 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 MYOFQ9NZM1 2061 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 TTC34A8MYJ7 566 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 MED26O95402 600 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 C6orf47O95873 294 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 SLC19A1P41440 591 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ALDH9A1P49189 494 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 CRISP3P54108 245 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 PPIGQ13427 754 aaKnown RBP eCLIP12.19□□□□□ -0.463e-7■■■□□ 16.7
LIG1-201ENST00000263274 EXOC3L2Q2M3D2 409 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 PROX2Q3B8N5 592 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 TRIM60Q495X7 471 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ZC3H12BQ5HYM0 836 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 CAPN13Q6MZZ7 669 aaPredicted RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 AGTRAPQ6RW13 159 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 CBLL1Q75N03 491 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 SERPINA11Q86U17 422 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 DNAJB8Q8NHS0 232 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ASZ1Q8WWH4 475 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 ASB11Q8WXH4 323 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 CLP1Q92989 425 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 MRPL9Q9BYD2 267 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 CWH43Q9H720 699 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 RDH14Q9HBH5 336 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 NDRG4Q9ULP0 352 aaKnown RBP12.19□□□□□ -0.46
LIG1-201ENST00000263274 PCDHB11Q9Y5F2 797 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 PCDHGA3Q9Y5H0 932 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 CHD5Q8TDI0 1954 aa12.19□□□□□ -0.46
LIG1-201ENST00000263274 A0A1W2PRU2 124 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SMIM30A4D0T7 59 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 GFRA2O00451 464 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 CA12O43570 354 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 DNAJB5O75953 348 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 MFN2O95140 757 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 ETHE1O95571 254 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 APOA1P02647 267 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 PTPN6P29350 595 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 ETV3P41162 512 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 CAP1Q01518 475 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 CLPPQ16740 277 aaPredicted RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 SPANXN2Q5MJ10 180 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 COX20Q5RI15 118 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 AKAP14Q86UN6 197 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 FAM217AQ8IXS0 508 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SORCS1Q8WY21 1168 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 TESCQ96BS2 214 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 VMP1Q96GC9 406 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 PKP4Q99569 1192 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 NIPSNAP1Q9BPW8 284 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 FAM83DQ9H4H8 585 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 RETREG1Q9H6L5 497 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 C11orf16Q9NQ32 467 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 ERVK13-1Q9NX77 482 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 MS4A12Q9NXJ0 267 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 PCDHGA6Q9Y5G7 932 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 VWA8A3KMH1 1905 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 NEDD8-MDP1E9PL57 170 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 H3BN98 237 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 TFECO14948 347 aaPredicted RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 SOX14O95416 240 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SLC10A3P09131 477 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 FEN1P39748 380 aaKnown RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 MXD1Q05195 221 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 C2orf80Q0P641 193 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SREBF2Q12772 1141 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 COL9A2Q14055 689 aaPredicted RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 STEAP3Q658P3 488 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 CCSAPQ6IQ19 270 aaPredicted RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.18□□□□□ -0.468e-7■□□□□ 9.2
LIG1-201ENST00000263274 NPAS3Q8IXF0 933 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 WDR36Q8NI36 951 aaKnown RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 PHF10Q8WUB8 498 aaKnown RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 GGHQ92820 318 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SCRN2Q96FV2 425 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SLIRPQ9GZT3 109 aaKnown RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 PRELID1Q9Y255 219 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 PATJQ8NI35 1801 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 A8MV72 311 aaPredicted RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 FAM227AF5H4B4 570 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 RPLP0P05388 317 aaKnown RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 CKMT1AP12532 417 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SRCP12931 536 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 JUPP14923 745 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 CD22P20273 847 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 GAB1Q13480 694 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 RGNQ15493 299 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 PPP2R2DQ66LE6 453 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 SLC8B1Q6J4K2 584 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 TMC5Q6UXY8 1006 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 PTCHD4Q6ZW05 846 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 GATAD2AQ86YP4 633 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 UBE2J2Q8N2K1 259 aa12.18□□□□□ -0.46
LIG1-201ENST00000263274 IPCEF1Q8WWN9 437 aaPredicted RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 CIDECQ96AQ7 238 aaPredicted RBP12.18□□□□□ -0.46
LIG1-201ENST00000263274 SLC35A5Q9BS91 424 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms