RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MIR1-1HGQ9H1L0 117 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CPNE5Q9HCH3 593 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 GPRC5CQ9NQ84 441 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 NKX1-2Q9UD57 310 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MAN1B1Q9UKM7 699 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SPEF2Q9C093 1822 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLC33A1O00400 549 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PRMT5O14744 637 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 UNC5CO95185 931 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 OTCP00480 354 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 FUCA1P04066 466 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 IL7P13232 177 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ACPPP15309 386 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CYP3A5P20815 502 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PHKA2P46019 1235 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 HOXA1P49639 335 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CCR6P51684 374 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PKNOX1P55347 436 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RHOAP61586 193 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 JAG1P78504 1218 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TFCP2Q12800 502 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 LPCAT3Q6P1A2 487 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLC51AQ86UW1 340 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ALYREFQ86V81 257 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 NHLRC2Q8NBF2 726 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 COQ8AQ8NI60 647 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 EAF1Q96JC9 268 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 WDFY2Q96P53 400 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF559Q9BR84 538 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TTYH3Q9C0H2 523 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ILKAPQ9H0C8 392 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DPEP3Q9H4B8 488 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RBM8AQ9Y5S9 174 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CDY1Q9Y6F8 540 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SALL3Q9BXA9 1300 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 LOC110117498-PIK3R3F6TDL0 507 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 GSTP1P09211 210 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 NME1P15531 152 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PMCHP20382 165 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ITPKAP23677 461 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PRDX6P30041 224 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RIDAP52758 137 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SPANXN2Q5MJ10 180 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PRAMEF8Q5VWM4 474 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PRAMEF7Q5VXH5 474 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF547Q8IVP9 402 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SCN4BQ8IWT1 228 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DAW1Q8N136 415 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SCARB1Q8WTV0 552 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RORBQ92753 470 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TAAR8Q969N4 342 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 NXNL1Q96CM4 212 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CTSFQ9UBX1 484 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SCML1Q9UN30 329 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 KIAA1024Q9UPX6 916 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 KCNK6Q9Y257 313 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DOPEY1Q5JWR5 2465 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ARHGAP21Q5T5U3 1957 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 EMSYQ7Z589 1322 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 A0A0G2JND7 137 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 OR6C68A6NDL8 312 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ADAM20O43506 726 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RDH16O75452 317 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ME2P23368 584 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CD81P60033 236 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PSMC5P62195 406 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CHRNEQ04844 493 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 XKRXQ6PP77 449 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RNF180Q86T96 592 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CMTR1Q8N1G2 835 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CREB3L4Q8TEY5 395 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PPP3R2Q96LZ3 170 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM208Q9BTX3 173 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 COMMD3Q9UBI1 195 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MAGEB2O15479 319 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 FADS1O60427 444 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 TYRP1P17643 537 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 PTGER2P43116 358 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 DHODHQ02127 395 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 DECR1Q16698 335 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 DUSP6Q16828 381 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 TSTD2Q5T7W7 516 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 MAP1SQ66K74 1059 aaPredicted RBP3.46□□□□□ -1.85
SCN1A-221ENST00000641996 FAM45BPQ6NSW5 357 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 LYSMD2Q8IV50 215 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 FAM47BQ8NA70 645 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 OR5D18Q8NGL1 313 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 FAM3CQ92520 227 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 FUZQ9BT04 418 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 RBCK1Q9BYM8 510 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 USP29Q9HBJ7 922 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 ADA2Q9NZK5 511 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 ZDHHC2Q9UIJ5 367 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 SF3B1O75533 1304 aaKnown RBP eCLIP3.46□□□□□ -1.85
SCN1A-221ENST00000641996 A0A0G2JN53 185 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 POP7O75817 140 aaKnown RBP3.46□□□□□ -1.85
SCN1A-221ENST00000641996 IL18RAPO95256 599 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 SERPINF2P08697 491 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 GLRA1P23415 457 aa3.46□□□□□ -1.85
SCN1A-221ENST00000641996 CAPGP40121 348 aa3.46□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms