RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CDH2P19022 906 aaPredicted RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 SLC5A2P31639 672 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 DRD3P35462 400 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 TAS2R38P59533 333 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 ADARB1P78563 741 aaKnown RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 SRSF11Q05519 484 aaKnown RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 ADRM1Q16186 407 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 CYP27C1Q4G0S4 372 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 PIP5KL1Q5T9C9 394 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 FKBP9P1Q75LS8 142 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 COMMD6Q7Z4G1 85 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 PATL1Q86TB9 770 aaKnown RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 PTOV1Q86YD1 416 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 FGF14Q92915 247 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 SDCCAG3Q96C92 435 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 HHIPQ96QV1 700 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 ZCCHC2Q9C0B9 1178 aaKnown RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 AMBRA1Q9C0C7 1298 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 ING2Q9H160 280 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 FZD4Q9ULV1 537 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 CCDC88CQ9P219 2028 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 A0A1B0GVG6 124 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 FEZF1A0PJY2 475 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 OPN1SWP03999 348 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 TNFRSF1BP20333 461 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 IDSP22304 550 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 DCTP40126 519 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 PNLIPRP1P54315 467 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 PDGFRLQ15198 375 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 DUSP6Q16828 381 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 WSCD2Q2TBF2 565 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 CEP68Q76N32 757 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 AMZ2Q86W34 360 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 PLD3Q8IV08 490 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 ZDHHC21Q8IVQ6 265 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 NAGSQ8N159 534 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 CHTF18Q8WVB6 975 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 SLC5A11Q8WWX8 675 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 TFGQ92734 400 aaPredicted RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 MTIF3Q9H2K0 278 aaKnown RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 OSGEPL1Q9H4B0 414 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 SPASTQ9UBP0 616 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 COMMD3-BMI1R4GMX3 469 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 FUCA1P04066 466 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 RETP07949 1114 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 C1GALT1C1LP0DN25 315 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 ZNF24P17028 368 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 ACADLP28330 430 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 GDI1P31150 447 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 MAT2AP31153 395 aaKnown RBP10.21□□□□□ -0.77
CUX1-221ENST00000622516 TIA1P31483 386 aaKnown RBP eCLIP10.21□□□□□ -0.771e-6■■■■□ 21
CUX1-221ENST00000622516 TIE1P35590 1138 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 TAS2R50P59544 299 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 VLDLRP98155 873 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 CTBSQ01459 385 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 MEP1AQ16819 746 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 PRSS53Q2L4Q9 553 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 BCL7AQ4VC05 210 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 C2orf27AQ580R0 203 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 COX20Q5RI15 118 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 PNCKQ6P2M8 343 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 PARM1Q6UWI2 310 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 ZZZ3Q8IYH5 903 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 OR8J2Q8NGG1 315 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 OR4A15Q8NGL6 344 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 OR2L2Q8NH16 312 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 GANCQ8TET4 914 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 NCSTNQ92542 709 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 SFXN1Q9H9B4 322 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 CCDC177Q9NQR7 707 aaPredicted RBP10.21□□□□□ -0.77
CUX1-221ENST00000622516 C5AR2Q9P296 337 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 TAC3Q9UHF0 121 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 MOSPD1Q9UJG1 213 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 CDC14AQ9UNH5 594 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 DMTF1Q9Y222 760 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 PLEKHM1Q9Y4G2 1056 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 PCDHGA8Q9Y5G5 932 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 HEATR5BQ9P2D3 2071 aa10.21□□□□□ -0.77
CUX1-221ENST00000622516 PRAMEF33A0A0G2JMD5 474 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 CRATP43155 626 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 TPD52P55327 224 aaPredicted RBP10.21□□□□□ -0.78
CUX1-221ENST00000622516 HBA1P69905 142 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 KCNAB2Q13303 367 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 PMS2P3Q13401 168 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 EIF4HQ15056 248 aaKnown RBP10.21□□□□□ -0.78
CUX1-221ENST00000622516 VMACQ2NL98 169 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 TMEM259Q4ZIN3 620 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 LPCAT2Q7L5N7 544 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 CLVS1Q8IUQ0 354 aaPredicted RBP10.21□□□□□ -0.78
CUX1-221ENST00000622516 LRRC56Q8IYG6 542 aaPredicted RBP10.21□□□□□ -0.78
CUX1-221ENST00000622516 FCRL1Q96LA6 429 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 OSBPL10Q9BXB5 764 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 OR52A5Q9H2C5 316 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 EPB41L1Q9H4G0 881 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 FZD3Q9NPG1 666 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 CUEDC1Q9NWM3 386 aaPredicted RBP10.21□□□□□ -0.78
CUX1-221ENST00000622516 NDUFA13Q9P0J0 144 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 IFT80Q9P2H3 777 aaPredicted RBP10.21□□□□□ -0.78
CUX1-221ENST00000622516 EBF1Q9UH73 591 aa10.21□□□□□ -0.78
CUX1-221ENST00000622516 STON1Q9Y6Q2 735 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms