RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 OPTCQ9UBM4 332 aa10.56□□□□□ -0.72
LIG1-211ENST00000596457 PTRH2Q9Y3E5 179 aaKnown RBP10.56□□□□□ -0.72
LIG1-211ENST00000596457 ASB1Q9Y576 335 aa10.56□□□□□ -0.72
LIG1-211ENST00000596457 TEX15Q9BXT5 2789 aa10.56□□□□□ -0.72
LIG1-211ENST00000596457 FER1L5A0AVI2 2057 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 NDUFS4O43181 175 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 CAPN1P07384 714 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 FURINP09958 794 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 COL6A2P12110 1019 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 MTHFD2P13995 350 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 ITGAXP20702 1163 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 FBLP22087 321 aaKnown RBP10.55□□□□□ -0.72
LIG1-211ENST00000596457 CXCR2P25025 360 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 OTX2P32243 289 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 GGT5P36269 586 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 ARL1P40616 181 aaPredicted RBP10.55□□□□□ -0.72
LIG1-211ENST00000596457 FOLR3P41439 243 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 GCGRP47871 477 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 REEP5Q00765 189 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 IRF8Q02556 426 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 RELAQ04206 551 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 CHIT1Q13231 466 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 NCF4Q15080 339 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 ATG9BQ674R7 924 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 EMBQ6PCB8 327 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 ZNF517Q6ZMY9 492 aaPredicted RBP10.55□□□□□ -0.72
LIG1-211ENST00000596457 SLCO4C1Q6ZQN7 724 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 LRRC70Q7Z2Q7 622 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 KLHDC8AQ8IYD2 350 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 CYP4X1Q8N118 509 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 KRT78Q8N1N4 520 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 PTGR2Q8N8N7 351 aaPredicted RBP10.55□□□□□ -0.72
LIG1-211ENST00000596457 KCT2Q8NC54 265 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 TTC9Q92623 222 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 MOCOSQ96EN8 888 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 SOX17Q9H6I2 414 aaPredicted RBP10.55□□□□□ -0.72
LIG1-211ENST00000596457 TMEM216Q9P0N5 145 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 FETUBQ9UGM5 382 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 TCFL5Q9UL49 500 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 PADI2Q9Y2J8 665 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 MRPS2Q9Y399 296 aaKnown RBP10.55□□□□□ -0.72
LIG1-211ENST00000596457 PCDHGA6Q9Y5G7 932 aa10.55□□□□□ -0.72
LIG1-211ENST00000596457 KCNE1BA0A087WTH5 132 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 ANKDD1BA6NHY2 528 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 K7EPI3 171 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 CNOT3O75175 753 aaKnown RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 SIX3O95343 332 aaPredicted RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 ITGB2P05107 769 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 SLC35G6P0C7Q6 338 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 SFTPCP11686 197 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 PCNAP12004 261 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 EPB42P16452 691 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 IL1RNP18510 177 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 EEF1DP29692 281 aaKnown RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 SCTRP47872 440 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 AVPR1BP47901 424 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 ALDH18A1P54886 795 aaKnown RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 SNRPNP63162 240 aaKnown RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 OCA2Q04671 838 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 RGS1Q08116 209 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 IL10RAQ13651 578 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 DOC2AQ14183 400 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 SETDB1Q15047 1291 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 TBR1Q16650 682 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 HIST2H2ACQ16777 129 aaPredicted RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 SYT16Q17RD7 645 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 TOR1AIP1Q5JTV8 583 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 GARNL3Q5VVW2 1013 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 HIST2H2AA3Q6FI13 130 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 OVCH1Q7RTY7 1134 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 PRSS41Q7RTY9 318 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 SYVN1Q86TM6 617 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 MYLK4Q86YV6 388 aaPredicted RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 TMEM151BQ8IW70 566 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 ANKRD53Q8N9V6 530 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 OR9A4Q8NGU2 314 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 CAVIN3Q969G5 261 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 ATP6V1E2Q96A05 226 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 TM4SF19Q96DZ7 209 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 C17orf62Q9BQA9 187 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 MRPL57Q9BQC6 102 aaKnown RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 DRC3Q9H069 523 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 MRPL46Q9H2W6 279 aaKnown RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 ANKHQ9HCJ1 492 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 SLC22A11Q9NSA0 550 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 GEMIN8Q9NWZ8 242 aaKnown RBP10.54□□□□□ -0.72
LIG1-211ENST00000596457 GPRC5BQ9NZH0 403 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 ZFP69BQ9UJL9 534 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 CDC14AQ9UNH5 594 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 PLAAQ9Y263 795 aa10.54□□□□□ -0.72
LIG1-211ENST00000596457 CCDC189A1A4V9 331 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 ZNF860A6NHJ4 632 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 J3QKU1 62 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 SGK494L7N484 410 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 PRPF4O43172 522 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIG1-211ENST00000596457 FOXS1O43638 330 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 PRAMEF4O60810 478 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 SH3BGRLO75368 114 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 B3GALT4O96024 378 aa10.53□□□□□ -0.72
LIG1-211ENST00000596457 CD63P08962 238 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms