RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ATXN7O15265 892 aaPredicted RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 NDUFS4O43181 175 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 KLK8O60259 260 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 MED26O95402 600 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 SHBGP04278 402 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 FURINP09958 794 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 EPB42P16452 691 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 FBLP22087 321 aaKnown RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 VARSP26640 1264 aaKnown RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 GSTM2P28161 218 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 HSD17B3P37058 310 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 NFKB2Q00653 900 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 OCA2Q04671 838 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 RGS1Q08116 209 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 LAPTM5Q13571 262 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 SETDB1Q15047 1291 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 NKG7Q16617 165 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 HIST2H2ACQ16777 129 aaPredicted RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 XKR6Q5GH73 641 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 ATP1A1-AS1Q5TC04 95 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 HIST2H2AA3Q6FI13 130 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 TMEM214Q6NUQ4 689 aaKnown RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 METTL2BQ6P1Q9 378 aaKnown RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 TDRPQ86YL5 185 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 RAB43Q86YS6 212 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 ZNF740Q8NDX6 193 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 TTLQ8NG68 377 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 UBTD2Q8WUN7 234 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 NACC2Q96BF6 587 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 PTCD3Q96EY7 689 aaKnown RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 SEC16BQ96JE7 1060 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 IP6K3Q96PC2 410 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 MRPL57Q9BQC6 102 aaKnown RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 ANKHQ9HCJ1 492 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 ZNF358Q9NW07 568 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 ANGPTL3Q9Y5C1 460 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 SLC22A7Q9Y694 548 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 A0A0A6YYC8 382 aaPredicted RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 I3L1I5 382 aaPredicted RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 TK2O00142 265 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 FOXS1O43638 330 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 SMIM24O75264 130 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 NSA2O95478 260 aaKnown RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 STATHP02808 62 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 SERPIND1P05546 499 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 SFTPCP11686 197 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 AGTR2P50052 363 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 IRF8Q02556 426 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 IL10RAQ13651 578 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 DSG2Q14126 1118 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 SLBPQ14493 270 aaKnown RBP eCLIP14.28□□□□□ -0.12
UPF1-202ENST00000594243 NAA30Q147X3 362 aaPredicted RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 RASA2Q15283 850 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 PCBP2Q15366 365 aaKnown RBP eCLIP14.28□□□□□ -0.12
UPF1-202ENST00000594243 TBCCQ15814 346 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 LINC00303Q3SY05 128 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 PAGE2BQ5JRK9 111 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 NIPAL1Q6NVV3 410 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 TMIGD1Q6UXZ0 262 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 COX15Q7KZN9 410 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 DTWD1Q8N5C7 304 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 KCT2Q8NC54 265 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 NT5CQ8TCD5 201 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 ADAMTS17Q8TE56 1095 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 AENQ8WTP8 325 aaKnown RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 CAVIN3Q969G5 261 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 WDR34Q96EX3 536 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 MACROD1Q9BQ69 325 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 EFCAB11Q9BUY7 163 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 YIPF2Q9BWQ6 316 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 PARD6BQ9BYG5 372 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 SPNS1Q9H2V7 528 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 MRPL46Q9H2W6 279 aaKnown RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 GEMIN8Q9NWZ8 242 aaKnown RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 CPSF2Q9P2I0 782 aaKnown RBP14.28□□□□□ -0.12
UPF1-202ENST00000594243 COPG2Q9UBF2 871 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 DCDC2Q9UHG0 476 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 MAN2B2Q9Y2E5 1009 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 MAP4K5Q9Y4K4 846 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 KCNMB2Q9Y691 235 aa14.28□□□□□ -0.12
UPF1-202ENST00000594243 ANKDD1BA6NHY2 528 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 VSTM2BA6NLU5 285 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 CNOT3O75175 753 aaKnown RBP14.27□□□□□ -0.13
UPF1-202ENST00000594243 CDH16O75309 829 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 IGHEP01854 428 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 SERPINA6P08185 405 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 GSTA1P08263 222 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 HPDP32754 393 aaPredicted RBP14.27□□□□□ -0.13
UPF1-202ENST00000594243 CASP2P42575 452 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 PIK3CGP48736 1102 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 SKP1P63208 163 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 PCDH1Q08174 1060 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 CHIT1Q13231 466 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 DOC2AQ14183 400 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 HERC3Q15034 1050 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 FAM69BQ5VUD6 431 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 ABHD13Q7L211 337 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 TEX9Q8N6V9 391 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 ANKRD53Q8N9V6 530 aa14.27□□□□□ -0.13
UPF1-202ENST00000594243 UBE2E3Q969T4 207 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms