RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 IRX4P78413 519 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 NFATC2Q13469 925 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 DUSP5Q16690 384 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 CAVIN1Q6NZI2 390 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 BTNL8Q6UX41 500 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 FRRS1Q6ZNA5 592 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 FAM47EQ6ZV65 393 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 SPATA19Q7Z5L4 167 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 ZER1Q7Z7L7 766 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 DZIP1Q86YF9 867 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 OR4D10Q8NGI6 311 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 GRK7Q8WTQ7 553 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 ST6GALNAC6Q969X2 333 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 EXOC4Q96A65 974 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 WBP1Q96G27 269 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 AK8Q96MA6 479 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 ZMAT2Q96NC0 199 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 NEDD4LQ96PU5 975 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 LRRC61Q9BV99 259 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 ZCCHC17Q9NP64 241 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 RUVBL2Q9Y230 463 aaKnown RBP3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 COLEC10Q9Y6Z7 277 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 NPHP3Q7Z494 1330 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 TRAV34A0A0B4J273 112 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 A8MVM7 634 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PRSS46E5RG02 174 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PI4K2BG5E9Z4 385 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 WDR46O15213 610 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 SURF4O15260 269 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 FLRT2O43155 660 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 CRLF1O75462 422 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 C9P02748 559 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 SP100P23497 879 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 RBMS1P29558 406 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PDHA2P29803 388 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 CLDN17P56750 224 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PTENP60484 403 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 DHODHQ02127 395 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 ELAVL2Q12926 359 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 FAM189A2Q15884 450 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 LPAL2Q16609 132 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 TXNRD3NBQ6F5E7 133 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 SHQ1Q6PI26 577 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PRSS55Q6UWB4 352 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PET117Q6UWS5 81 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 TMEM182Q6ZP80 229 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PHLDB2Q86SQ0 1253 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PRUNE1Q86TP1 453 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PRSS35Q8N3Z0 413 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 Q8NBF4 154 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 NCOA7Q8NI08 942 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 ATP8B4Q8TF62 1192 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 OMA1Q96E52 524 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 CNRIP1Q96F85 164 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 BSCL2Q96G97 398 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 AGAP4Q96P64 663 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 INTS14Q96SY0 518 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 OVOL2Q9BRP0 275 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 DNAI2Q9GZS0 605 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 LNPEPQ9UIQ6 1025 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 FBXL4Q9UKA2 621 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 PILRBQ9UKJ0 227 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 POMT2Q9UKY4 750 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 AGTPBP1Q9UPW5 1226 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 MOB4Q9Y3A3 225 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 WIPI2Q9Y4P8 454 aa3.82□□□□□ -1.8
SMCHD1-204ENST00000581226 TRAV18A0A075B6X5 111 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 LOC105371242A0A075B767 164 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 NPIPB9F8W1W9 429 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 H3BMM5 538 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 SOCS3O14543 225 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 SAP30O75446 220 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 SCG2P13521 617 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 SNAI3Q3KNW1 292 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 SPECC1Q5M775 1068 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 ATP1A1-AS1Q5TC04 95 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 METTL4Q8N3J2 472 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 AQP11Q8NBQ7 271 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 PRSS33Q8NF86 280 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 C11orf45Q8TAV5 145 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 CHURC1Q8WUH1 139 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 TAF15Q92804 592 aaKnown RBP eCLIP3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 RIT1Q92963 219 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 ATXN7L3BQ96GX2 97 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 PRICKLE1Q96MT3 831 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 C10orf88Q9H8K7 445 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 MINDY3Q9H8M7 445 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 LMAN1LQ9HAT1 526 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 RAB9BQ9NP90 201 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 IARS2Q9NSE4 1012 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 NDE1Q9NXR1 346 aa3.81□□□□□ -1.8
SMCHD1-204ENST00000581226 SPATA31D1Q6ZQQ2 1576 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 A0A087WZ39 114 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 C5orf52A6NGY3 159 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 E5RGE8 158 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 NPIPA3F8WFD2 350 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 RTCAO00442 366 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 TFECO14948 347 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 MOCS2O96007 188 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 ZFYP08048 801 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms