RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SPATA1Q5VX52 437 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 C16orf54Q6UWD8 224 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 CAMKMTQ7Z624 323 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 CCDC60Q8IWA6 550 aaPredicted RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 MAML2Q8IZL2 1156 aaPredicted RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 NME8Q8N427 588 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 ANKRD13CQ8N6S4 541 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 POMGNT2Q8NAT1 580 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 RPLP0P6Q8NHW5 317 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 B3GALT6Q96L58 329 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 FAM218AQ96MZ4 157 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 DGAT2Q96PD7 388 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 CPNE1Q99829 537 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 APOL6Q9BWW8 343 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 LRRCC1Q9C099 1032 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 STRADBQ9C0K7 418 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 GPR88Q9GZN0 384 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 ACTL8Q9H568 366 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 CNOT10Q9H9A5 744 aaKnown RBP2.23□□□□□ -2.05
VPS35-207ENST00000568191 OLAHQ9NV23 265 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 NSMCE4AQ9NXX6 385 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 KLK11Q9UBX7 282 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 TRPV2Q9Y5S1 764 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 SNX8Q9Y5X2 465 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 CROCCQ5TZA2 2017 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 NOTCH2Q04721 2471 aa2.23□□□□□ -2.05
VPS35-207ENST00000568191 A0A1W2PPK0 400 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 E9PAM4 449 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 INPP4BO15327 924 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 ADRB2P07550 413 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 AKR1B1P15121 316 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 MC5RP33032 325 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 DRD3P35462 400 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 CACNG1Q06432 222 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 PRKG2Q13237 762 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 TRA2AQ13595 282 aaKnown RBP eCLIP2.22□□□□□ -2.05
VPS35-207ENST00000568191 GCKRQ14397 625 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 RFTN1Q14699 578 aaPredicted RBP2.22□□□□□ -2.05
VPS35-207ENST00000568191 TOMM20Q15388 145 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 RBBP7Q16576 425 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 DUSP5Q16690 384 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 TMEM266Q2M3C6 531 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 LETM2Q2VYF4 491 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 CYB5D1Q6P9G0 228 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 SLC22A15Q8IZD6 547 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 PARP8Q8N3A8 854 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 CCDC63Q8NA47 563 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 SLC4A11Q8NBS3 891 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 SLC26A7Q8TE54 656 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 KLHL5Q96PQ7 755 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 OCR1Q9BZK8 76 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 ANKRD2Q9GZV1 360 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 XAB2Q9HCS7 855 aaKnown RBP2.22□□□□□ -2.05
VPS35-207ENST00000568191 TNFRSF19Q9NS68 423 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 EXOC1Q9NV70 894 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 ZNF581Q9P0T4 197 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 ABCD2Q9UBJ2 740 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 POLKQ9UBT6 870 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 POMT2Q9UKY4 750 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 ZNF256Q9Y2P7 627 aaPredicted RBP2.22□□□□□ -2.05
VPS35-207ENST00000568191 KLF2Q9Y5W3 355 aaPredicted RBP2.22□□□□□ -2.05
VPS35-207ENST00000568191 FAM169AQ9Y6X4 670 aa2.22□□□□□ -2.05
VPS35-207ENST00000568191 IGHV3-38A0A0C4DH36 116 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 GLTPD2A6NH11 291 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 SHISA7A6NL88 538 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 A8MVM7 634 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 F8VVB4 439 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 F8VWA3 439 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 G3V2L1 256 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 RNF103O00237 685 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 PTGESO14684 152 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 RTL8CO15255 209 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 PHF1O43189 567 aaPredicted RBP2.21□□□□□ -2.06
VPS35-207ENST00000568191 STARD3NLO95772 234 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 MT-ND1P03886 318 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 ATP5BP06576 529 aaKnown RBP2.21□□□□□ -2.06
VPS35-207ENST00000568191 CSN3P07498 182 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 YES1P07947 543 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 CD22P20273 847 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 C4BPBP20851 252 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 LMO2P25791 158 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 ALDH1B1P30837 517 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 NNMTP40261 264 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 HLCSP50747 726 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 ATP4BP51164 291 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 HCFC1P51610 2035 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 CCR3P51677 355 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 PPP5CP53041 499 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 LIMK1P53667 647 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 NDUFV3P56181 108 aaKnown RBP2.21□□□□□ -2.06
VPS35-207ENST00000568191 ACY1Q03154 408 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 RASGEF1BQ0VAM2 473 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 RUNX3Q13761 415 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 VWC2Q2TAL6 325 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 ATAD3CQ5T2N8 411 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 ARMC4Q5T2S8 1044 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 IQCHQ86VS3 1027 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 AMIGO1Q86WK6 493 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 MFN1Q8IWA4 741 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms