RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 TBATAQ96M53 351 aa13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 ZYG11BQ9C0D3 744 aa13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 SPNS1Q9H2V7 528 aa13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 IKZF5Q9H5V7 419 aa13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 TRIM45Q9H8W5 580 aaPredicted RBP13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 ZIM2Q9NZV7 527 aa13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 CPNE7Q9UBL6 633 aa13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 OGDHLQ9ULD0 1010 aa13.57□□□□□ -0.24
GTF3C1-203ENST00000562609 RANBP2P49792 3224 aaKnown RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 A0A1W2PRG6 482 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 ELOVL7A1L3X0 281 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 TLR5O60602 858 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 SERPINA1P01009 418 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 CHMP24386 653 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 ACVRL1P37023 503 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 WNT3AP56704 352 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 RPP38P78345 283 aaKnown RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 FLYWCH1Q4VC44 716 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 FAM131AQ6UXB0 335 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 LIPIQ6XZB0 460 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 TIGD4Q8IY51 512 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 OR7D4Q8NG98 312 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 MYDGFQ969H8 173 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 ZNF578Q96N58 590 aaPredicted RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 PSORS1C1Q9UIG5 152 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 ANXA9O76027 345 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 PEX11BO96011 259 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 STSP08842 583 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 CCT3P49368 545 aaKnown RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 ARHGDIAP52565 204 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 NUDT6P53370 316 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 CDKN2DP55273 166 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 NFKB2Q00653 900 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 MRPL28Q13084 256 aaKnown RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 MAB21L1Q13394 359 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 PWP1Q13610 501 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 FBXO43Q4G163 708 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 KDELC1Q6UW63 502 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 CFAP77Q6ZQR2 320 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 LDB1Q86U70 411 aaPredicted RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 OR2T11Q8NH01 316 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 USB1Q9BQ65 265 aaKnown RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 IFT22Q9H7X7 185 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 DCAF13Q9NV06 445 aaKnown RBP13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 MICAL3Q7RTP6 2002 aa13.56□□□□□ -0.24
GTF3C1-203ENST00000562609 KIAA0100Q14667 2235 aaKnown RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 TRAV19A0A0A6YYK7 116 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 WASHC1A8K0Z3 465 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 CACNG3O60359 315 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 PDE9AO76083 593 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 VIPP01282 170 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 CDK1P06493 297 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 CSF3P09919 207 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 PAMP19021 973 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 KELP23276 732 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 DNAJB2P25686 324 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 OR1E1P30953 314 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 OR1D2P34982 312 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 VEGFBP49765 207 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 ERVK-8P63133 956 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 GPR17Q13304 367 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 SAXO2Q658L1 398 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 HDDC2Q7Z4H3 204 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 ZNF683Q8IZ20 524 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 OR8J3Q8NGG0 315 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 ST8SIA2Q92186 375 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 HYLS1Q96M11 299 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 TTPALQ9BTX7 342 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 BARHL1Q9BZE3 327 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 SP110Q9HB58 689 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 TLR8Q9NR97 1041 aaKnown RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 KRT84Q9NSB2 600 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 KIF17Q9P2E2 1029 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 GMEB2Q9UKD1 530 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 NEUROG3Q9Y4Z2 214 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 KLK4Q9Y5K2 254 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 COL4A4P53420 1690 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 PRRC2BQ5JSZ5 2229 aaKnown RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 A0A0D9SEW6 157 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 UBA6A0AVT1 1052 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 TRIM3O75382 744 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 SCELO95171 688 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 PIRTP0C851 137 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 PRDX3P30048 256 aaKnown RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 EVI2BP34910 448 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 CLCN5P51795 746 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 PTPRCAPQ14761 206 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 VEPH1Q14D04 833 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 TAF12Q16514 161 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 MARC1Q5VT66 337 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 NADSYN1Q6IA69 706 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 CCDC149Q6ZUS6 474 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 ZDHHC21Q8IVQ6 265 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 ZNF366Q8N895 744 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 ATG16L2Q8NAA4 619 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 GGHQ92820 318 aa13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 GFM1Q96RP9 751 aaKnown RBP13.55□□□□□ -0.24
GTF3C1-203ENST00000562609 EXOSC4Q9NPD3 245 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms