RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ENO1P06733 434 aaKnown RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 CCNYL3P0C7X3 344 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 PIM1P11309 404 aaPredicted RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 PCNAP12004 261 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 CREB1P16220 341 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 ZNF10P21506 573 aaPredicted RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 AGXTP21549 392 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 BCL6P41182 706 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 ETV4P43268 484 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 SERPINB4P48594 390 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 NAGLUP54802 743 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 STXBP1P61764 594 aaKnown RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 TGM3Q08188 693 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 TRAF3Q13114 568 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 UNC50Q53HI1 259 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 TTC19Q6DKK2 380 aaPredicted RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 RHBDD2Q6NTF9 364 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 PRMT9Q6P2P2 845 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 FBXO42Q6P3S6 717 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 FRMD7Q6ZUT3 714 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 GPRIN3Q6ZVF9 776 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 ABHD13Q7L211 337 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 VN1R4Q7Z5H5 301 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 MILR1Q7Z6M3 343 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 NUDCD3Q8IVD9 361 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 C10orf107Q8IVU9 208 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 TRIM42Q8IWZ5 723 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.62□□□□□ -0.873e-6■■■■■ 29
USP3-216ENST00000559873 KIRREL3Q8IZU9 778 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 NLGN4XQ8N0W4 816 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 ANKRD42Q8N9B4 389 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 L3MBTL4Q8NA19 623 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 ZNF248Q8NDW4 579 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 NLGN4YQ8NFZ3 816 aaPredicted RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 SNIP1Q8TAD8 396 aaKnown RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 TRPC4APQ8TEL6 797 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 GATA6Q92908 595 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 FGF11Q92914 225 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 PMEPA1Q969W9 287 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 KIAA1143Q96AT1 154 aaPredicted RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 ZBTB9Q96C00 473 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 MVB12AQ96EY5 273 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 C12orf65Q9H3J6 166 aaKnown RBP9.62□□□□□ -0.87
USP3-216ENST00000559873 ELOVL6Q9H5J4 265 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 CUTCQ9NTM9 273 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 NDOR1Q9UHB4 597 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 TRPS1Q9UHF7 1281 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 CDC14AQ9UNH5 594 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 SNX6Q9UNH7 406 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 TSC22D4Q9Y3Q8 395 aa9.62□□□□□ -0.87
USP3-216ENST00000559873 LOC105369274A0A096LPK9 316 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 LOC102723532A0A0G2JNH3 316 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 OR7A17O14581 309 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 DSCR3O14972 297 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 NPHS1O60500 1241 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 RAD1O60671 282 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 SASH3O75995 380 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 TIAF1O95411 115 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 ESRRBO95718 433 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 KRT6AP02538 564 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 KRT6BP04259 564 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 BPGMP07738 259 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 SERPINA6P08185 405 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 EPORP19235 508 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 GRK2P25098 689 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 HMOX2P30519 316 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 ALDH3A1P30838 453 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 PIK3CBP42338 1070 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 AVPR1BP47901 424 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 KRT6CP48668 564 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 CDH13P55290 713 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 CYP4F2P78329 520 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 ABHD18Q0P651 414 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 IFT88Q13099 833 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 HERC3Q15034 1050 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 CPSF6Q16630 551 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP3-216ENST00000559873 PRTGQ2VWP7 1150 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 TTMPQ5BVD1 217 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 FRG2Q64ET8 278 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 C6orf15Q6UXA7 325 aaPredicted RBP9.61□□□□□ -0.87
USP3-216ENST00000559873 TTLL10Q6ZVT0 673 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 LAS2Q8IYD9 372 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 OR4N4Q8N0Y3 316 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 IL22RA1Q8N6P7 574 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 ZNF740Q8NDX6 193 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 SRFBP1Q8NEF9 429 aaKnown RBP9.61□□□□□ -0.87
USP3-216ENST00000559873 OR4F6Q8NGB9 312 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 OR52B6Q8NGF0 335 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 MDM1Q8TC05 714 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 NT5CQ8TCD5 201 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 KCNE4Q8WWG9 221 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 ARL8AQ96BM9 186 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 CNDP1Q96KN2 507 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 NSUN5Q96P11 429 aaKnown RBP9.61□□□□□ -0.87
USP3-216ENST00000559873 FRG2BQ96QU4 278 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 PAIP2Q9BPZ3 127 aaKnown RBP9.61□□□□□ -0.87
USP3-216ENST00000559873 EFHD1Q9BUP0 239 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 SLC29A3Q9BZD2 475 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 FAM117AQ9C073 453 aa9.61□□□□□ -0.87
USP3-216ENST00000559873 SPRTNQ9H040 489 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms