RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 CCDC68Q9H2F9 335 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 SGK2Q9HBY8 427 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 EPB41L5Q9HCM4 733 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 PLSCR4Q9NRQ2 329 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 PRMT7Q9NVM4 692 aaPredicted RBP5.57□□□□□ -1.52
RTF1-204ENST00000558117 DNAJC17Q9NVM6 304 aaKnown RBP5.57□□□□□ -1.52
RTF1-204ENST00000558117 KCND2Q9NZV8 630 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 WRAP73Q9P2S5 460 aaPredicted RBP5.57□□□□□ -1.52
RTF1-204ENST00000558117 NFKBIL1Q9UBC1 381 aaPredicted RBP5.57□□□□□ -1.52
RTF1-204ENST00000558117 LRWD1Q9UFC0 647 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 SARDHQ9UL12 918 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 CAMK2AQ9UQM7 478 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 PCDHGB1Q9Y5G3 927 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 KLF2Q9Y5W3 355 aaPredicted RBP5.57□□□□□ -1.52
RTF1-204ENST00000558117 CPQQ9Y646 472 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 PLXNA2O75051 1894 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 RP1P56715 2156 aa5.57□□□□□ -1.52
RTF1-204ENST00000558117 IGLV5-52A0A0A0MRZ9 124 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 A0A1W2PQM1 296 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 CPED1A4D0V7 1026 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 RNF212BA8MTL3 300 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 NTN3O00634 580 aaPredicted RBP5.56□□□□□ -1.52
RTF1-204ENST00000558117 CACNG3O60359 315 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 DOK2O60496 412 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 OLFM2O95897 454 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 CALM1P0DP23 149 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 CALM2P0DP24 149 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 CALM3P0DP25 149 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 COMPP49747 757 aaPredicted RBP5.56□□□□□ -1.52
RTF1-204ENST00000558117 SEC61A1P61619 476 aaKnown RBP5.56□□□□□ -1.52
RTF1-204ENST00000558117 KRT32Q14532 448 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 RNPS1Q15287 305 aaKnown RBP5.56□□□□□ -1.52
RTF1-204ENST00000558117 CDKN3Q16667 212 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 MCMDC2Q4G0Z9 681 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 SGO1Q5FBB7 561 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 CPLX2Q6PUV4 134 aaKnown RBP5.56□□□□□ -1.52
RTF1-204ENST00000558117 KLHL24Q6TFL4 600 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 RRM2BQ7LG56 351 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 DSG4Q86SJ6 1040 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 ITPRIPQ8IWB1 547 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 CHDHQ8NE62 594 aaPredicted RBP5.56□□□□□ -1.52
RTF1-204ENST00000558117 OR2T3Q8NH03 318 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 WASF1Q92558 559 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 OTUB2Q96DC9 234 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 C19orf60Q96EN9 201 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 BBS4Q96RK4 519 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 ADPGKQ9BRR6 497 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 TEKT3Q9BXF9 490 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 GHITMQ9H3K2 345 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 SPHK2Q9NRA0 654 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 PCDHB16Q9NRJ7 776 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 OCIAD1Q9NX40 245 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 NLGN3Q9NZ94 848 aa5.56□□□□□ -1.52
RTF1-204ENST00000558117 LSM4Q9Y4Z0 139 aaKnown RBP5.56□□□□□ -1.52
RTF1-204ENST00000558117 TRIP11Q15643 1979 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 ANK3Q12955 4377 aaKnown RBP5.55□□□□□ -1.52
RTF1-204ENST00000558117 ANKUB1A6NFN9 424 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 SH2B2O14492 632 aaPredicted RBP5.55□□□□□ -1.52
RTF1-204ENST00000558117 LRRTM2O43300 516 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 ALPPL2P10696 532 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 ETFAP13804 333 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 GALCP54803 685 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 CASP6P55212 293 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 ITGADQ13349 1161 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 PRPF4BQ13523 1007 aaKnown RBP5.55□□□□□ -1.52
RTF1-204ENST00000558117 DRAP1Q14919 205 aaPredicted RBP5.55□□□□□ -1.52
RTF1-204ENST00000558117 DCAF4L1Q3SXM0 396 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 CCDC92Q53HC0 331 aaPredicted RBP5.55□□□□□ -1.52
RTF1-204ENST00000558117 HAUS3Q68CZ6 603 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 C18orf65Q6ZTR6 163 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 SHFQ7M4L6 423 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 KLHL29Q96CT2 875 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 RTP4Q96DX8 246 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 C14orf79Q96F83 325 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 SERAC1Q96JX3 654 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 CISD1Q9NZ45 108 aaKnown RBP5.55□□□□□ -1.52
RTF1-204ENST00000558117 MPP6Q9NZW5 540 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 ORC3Q9UBD5 711 aaPredicted RBP5.55□□□□□ -1.52
RTF1-204ENST00000558117 COPG2Q9UBF2 871 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 TUBGCP4Q9UGJ1 667 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 FAM96BQ9Y3D0 163 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 LOXL2Q9Y4K0 774 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 SCN8AQ9UQD0 1980 aa5.55□□□□□ -1.52
RTF1-204ENST00000558117 MGAM2Q2M2H8 2515 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 FAM47DPA6NHR8 397 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 TMX2-CTNND1H3BSU7 103 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 SCAMP1O15126 338 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 P4HA2O15460 535 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 HSPA12AO43301 675 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 KRT86O43790 486 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 HMMRO75330 724 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 SEC31AO94979 1220 aaKnown RBP5.54□□□□□ -1.52
RTF1-204ENST00000558117 TFP02787 698 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 DNTTP04053 509 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 AGAP20933 346 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 RPS14P62263 151 aaKnown RBP5.54□□□□□ -1.52
RTF1-204ENST00000558117 RUNX1T1Q06455 604 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 SMARCB1Q12824 385 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 ZNF234Q14588 700 aa5.54□□□□□ -1.52
RTF1-204ENST00000558117 ATP1A1-AS1Q5TC04 95 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms