RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RPS13P62277 151 aaKnown RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 SRSF11Q05519 484 aaKnown RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 IL18R1Q13478 541 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 RGNQ15493 299 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CPTPQ5TA50 214 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 GDPD4Q6W3E5 623 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PAGE2Q7Z2X7 111 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CCDC103Q8IW40 242 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 MFSD4AQ8N468 514 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 C2orf73Q8N5S3 287 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 SETD9Q8NE22 299 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 OR7G3Q8NG95 312 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 OR8J2Q8NGG1 315 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 ASZ1Q8WWH4 475 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 LGALS12Q96DT0 336 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 TRIM39Q9HCM9 518 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 SCN3BQ9NY72 215 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 RNF6Q9Y252 685 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 AP3M1Q9Y2T2 418 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PPIL1Q9Y3C6 166 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 SCAMP2O15127 329 aaKnown RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 CXCL10P02778 98 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CTSLP07711 333 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CTSAP10619 480 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PORP16435 677 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 HOXD10P28358 340 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 SLC19A1P41440 591 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 KEAP1Q14145 624 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 GRIN2CQ14957 1233 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PRSS53Q2L4Q9 553 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 SYT6Q5T7P8 510 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 DSG4Q86SJ6 1040 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 SLC5A8Q8N695 610 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 DYNC2LI1Q8TCX1 351 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PXYLP1Q8TE99 480 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PKP4Q99569 1192 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 ZNF106Q9H2Y7 1883 aaKnown RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 SACM1LQ9NTJ5 587 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 TAS2R16Q9NYV7 291 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 C1orf226A1L170 272 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 ARHGEF15O94989 841 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 IDSP22304 550 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 IMPA1P29218 277 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 TGFBR2P37173 567 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 IDH2P48735 452 aaKnown RBP12.41□□□□□ -0.42
LDLR-207ENST00000558013 HBA1P69905 142 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 CYP4F2P78329 520 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 TLE2Q04725 743 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 ACOX1Q15067 660 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 PLEKHS1Q5SXH7 462 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 ADCK1Q86TW2 530 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 TSPYL5Q86VY4 417 aaPredicted RBP12.41□□□□□ -0.42
LDLR-207ENST00000558013 TCAIMQ8N3R3 496 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 CPXM2Q8N436 756 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 APOL4Q9BPW4 351 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 HERC2P3Q9BVR0 1158 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 CHST8Q9H2A9 424 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 RAD18Q9NS91 495 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 GULP1Q9UBP9 304 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 RPS6KA6Q9UK32 745 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 COL4A6Q14031 1691 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 NINQ8N4C6 2090 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 SLCO2B1O94956 709 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 TGFB1P01137 390 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 HLA-EP13747 358 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 GRK5P34947 590 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 ST13P50502 369 aaKnown RBP12.41□□□□□ -0.42
LDLR-207ENST00000558013 SLC7A9P82251 487 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 KCNC4Q03721 635 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 OXA1LQ15070 435 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 CARTPTQ16568 116 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 CDKL4Q5MAI5 379 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 MPP7Q5T2T1 576 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 FAHD1Q6P587 224 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 TMPRSS11BQ86T26 416 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 ADIPOR2Q86V24 386 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 ZNF740Q8NDX6 193 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 FCRL1Q96LA6 429 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 NIPSNAP1Q9BPW8 284 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 MIR1-1HGQ9H1L0 117 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 SPNS1Q9H2V7 528 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 OR51B5Q9H339 312 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 NDUFAF4Q9P032 175 aa12.41□□□□□ -0.42
LDLR-207ENST00000558013 SUV39H1O43463 412 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 MPC1LP0DKB6 136 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 MAGP20916 626 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 TPP2P29144 1249 aaPredicted RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 ITGA1P56199 1179 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 AP1S2P56377 157 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 ZNF846Q147U1 533 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 RAVER1Q8IY67 606 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 OR4A15Q8NGL6 344 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 WRAP53Q9BUR4 548 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 SORBS1Q9BX66 1292 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 ASPSCR1Q9BZE9 553 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 SLIRPQ9GZT3 109 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 GPR83Q9NYM4 423 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 RHCGQ9UBD6 479 aa12.4□□□□□ -0.42
LDLR-207ENST00000558013 RUVBL1Q9Y265 456 aaKnown RBP12.4□□□□□ -0.42
LDLR-207ENST00000558013 TRAV19A0A0A6YYK7 116 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms