RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 OTX2P32243 289 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 GLRBP48167 497 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 RRADP55042 308 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 SKP1P63208 163 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 KCNAB2Q13303 367 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 COL9A2Q14055 689 aaPredicted RBP11.87□□□□□ -0.51
SLIRP-209ENST00000557342 DSG2Q14126 1118 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 RBBP5Q15291 538 aaKnown RBP11.87□□□□□ -0.51
SLIRP-209ENST00000557342 PDK4Q16654 411 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 TMEM214Q6NUQ4 689 aaKnown RBP11.87□□□□□ -0.51
SLIRP-209ENST00000557342 TIFABQ6ZNK6 161 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 SLCO4C1Q6ZQN7 724 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 MED25Q71SY5 747 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 EXD3Q8N9H8 876 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 TMEM102Q8N9M5 508 aaPredicted RBP11.87□□□□□ -0.51
SLIRP-209ENST00000557342 TRPV3Q8NET8 790 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 TTLQ8NG68 377 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 NT5CQ8TCD5 201 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 UBTD2Q8WUN7 234 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 UBLCP1Q8WVY7 318 aaPredicted RBP11.87□□□□□ -0.51
SLIRP-209ENST00000557342 MIEF2Q96C03 454 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 SEC16BQ96JE7 1060 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 VPS50Q96JG6 964 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 YIPF2Q9BWQ6 316 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 NT5DC2Q9H857 520 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 ANKZF1Q9H8Y5 726 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 PPCSQ9HAB8 311 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 ANKHQ9HCJ1 492 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 MKKSQ9NPJ1 570 aaPredicted RBP11.87□□□□□ -0.51
SLIRP-209ENST00000557342 ACSS2Q9NR19 701 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 SEMA3GQ9NS98 782 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 C14orf105Q9NVL8 296 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 PSMC3IPQ9P2W1 217 aaPredicted RBP11.87□□□□□ -0.51
SLIRP-209ENST00000557342 TMCO1Q9UM00 188 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 MAP4K5Q9Y4K4 846 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 SLC22A7Q9Y694 548 aa11.87□□□□□ -0.51
SLIRP-209ENST00000557342 IGLV3-12A0A075B6K2 115 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 A0A0A6YYC8 382 aaPredicted RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 MKRN2OSH3BPM6 223 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 I3L1I5 382 aaPredicted RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 K7EPI3 171 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 MAP2K7O14733 419 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 NDUFS4O43181 175 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 FOXS1O43638 330 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 RFPL1O75677 317 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 STATHP02808 62 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 SERPIND1P05546 499 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 UMODP07911 640 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 ZGLP1P0C6A0 271 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 GFAPP14136 432 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 GCAP28676 217 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 ALDH18A1P54886 795 aaKnown RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 LAPTM5Q13571 262 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 HERC3Q15034 1050 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 HIST2H2ACQ16777 129 aaPredicted RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 XKR6Q5GH73 641 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 PAGE2BQ5JRK9 111 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 FAM69BQ5VUD6 431 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 HIST2H2AA3Q6FI13 130 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 METTL2BQ6P1Q9 378 aaKnown RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 TMIGD1Q6UXZ0 262 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 ABHD13Q7L211 337 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 DTWD1Q8N5C7 304 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 KCT2Q8NC54 265 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 ZNF740Q8NDX6 193 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 STT3BQ8TCJ2 826 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 ESAMQ96AP7 390 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 PTCD3Q96EY7 689 aaKnown RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 SCYL1Q96KG9 808 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 FER1L6-AS2Q96M78 137 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 GPR78Q96P69 363 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 SPSB2Q99619 263 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 EFCAB11Q9BUY7 163 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 SPNS1Q9H2V7 528 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 EPB41L4BQ9H329 900 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 SOX17Q9H6I2 414 aaPredicted RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 COPG2Q9UBF2 871 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 OPTCQ9UBM4 332 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 TRPC4Q9UBN4 977 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 CTSFQ9UBX1 484 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 TNPO3Q9Y5L0 923 aaKnown RBP11.86□□□□□ -0.51
SLIRP-209ENST00000557342 ITPR1Q14643 2758 aa11.86□□□□□ -0.51
SLIRP-209ENST00000557342 LOC400499M0QZD8 3231 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 ARGFXA6NJG6 315 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 PCDH17O14917 1159 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 KLK8O60259 260 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 SERPINA6P08185 405 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 MTHFD2P13995 350 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 MMP11P24347 488 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 VARSP26640 1264 aaKnown RBP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 HPDP32754 393 aaPredicted RBP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 IRF8Q02556 426 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 ATP1A4Q13733 1029 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 SLBPQ14493 270 aaKnown RBP eCLIP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 NAA30Q147X3 362 aaPredicted RBP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 SETDB1Q15047 1291 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 TBCCQ15814 346 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 PFKFB4Q16877 469 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 FBXO48Q5FWF7 155 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 TECRLQ5HYJ1 363 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms