RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 ARHGEF37A1IGU5 675 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 IFIT3O14879 490 aaKnown RBP2.55□□□□□ -2
SCFD1-218ENST00000556256 SNX3O60493 162 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 FCGR3BO75015 233 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 SPP1P10451 314 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 CD59P13987 128 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 CSTF2P33240 577 aaKnown RBP eCLIP2.55□□□□□ -2
SCFD1-218ENST00000556256 CDX1P47902 265 aaPredicted RBP2.55□□□□□ -2
SCFD1-218ENST00000556256 HERV-K104P61576 105 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 GCNT1Q02742 428 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 SCN1BQ07699 218 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 RASGEF1BQ0VAM2 473 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 ILF2Q12905 390 aaKnown RBP2.55□□□□□ -2
SCFD1-218ENST00000556256 MEP1BQ16820 701 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 TYSND1Q2T9J0 566 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 C20orf194Q5TEA3 1177 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 KHDRBS2Q5VWX1 349 aaKnown RBP2.55□□□□□ -2
SCFD1-218ENST00000556256 UGT3A1Q6NUS8 523 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 NHLRC1Q6VVB1 395 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 MSANTD1Q6ZTZ1 278 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 NRARPQ7Z6K4 114 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 KIRREL3Q8IZU9 778 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 APCDD1Q8J025 514 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 SEPT1Q8WYJ6 367 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 DYRK2Q92630 601 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 DNASE1L2Q92874 299 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 SLCO2A1Q92959 643 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 NSL1Q96IY1 281 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 CCDC3Q9BQI4 270 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 URM1Q9BTM9 101 aaKnown RBP2.55□□□□□ -2
SCFD1-218ENST00000556256 PRRG4Q9BZD6 226 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 MTMR12Q9C0I1 747 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 ZMYND12Q9H0C1 365 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 THAP2Q9H0W7 228 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 ACTL8Q9H568 366 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 PANK4Q9NVE7 773 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 GRID1Q9ULK0 1009 aa2.55□□□□□ -2
SCFD1-218ENST00000556256 ZFP37Q9Y6Q3 630 aaPredicted RBP2.55□□□□□ -2
SCFD1-218ENST00000556256 CCL24O00175 119 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 SELENOFO60613 162 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 PRAF2O60831 178 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 GLRA3O75311 464 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 RPS6KA5O75582 802 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 KRT33AO76009 404 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 DDHD2O94830 711 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 VIMP08670 466 aaKnown RBP2.54□□□□□ -2
SCFD1-218ENST00000556256 SUPT20HL2P0C7V6 817 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 LBPP18428 481 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 MUTP22033 750 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 PSMB4P28070 264 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 PTK6Q13882 451 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 LY6DQ14210 128 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 FASTKD3Q14CZ7 662 aaKnown RBP2.54□□□□□ -2
SCFD1-218ENST00000556256 GPR33Q49SQ1 333 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 LYSMD4Q5XG99 296 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 C11orf88Q6PI97 169 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 BTNL8Q6UX41 500 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 SPATA21Q7Z572 469 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 CDK20Q8IZL9 346 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 SIX6OS1Q8N1H7 587 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 Q8NBF4 154 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 ATAD1Q8NBU5 361 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 NOA1Q8NC60 698 aaKnown RBP2.54□□□□□ -2
SCFD1-218ENST00000556256 OR4C3Q8NH37 302 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 MIPOL1Q8TD10 442 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 RIT1Q92963 219 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 C4orf45Q96LM5 186 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 C10orf90Q96M02 699 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 GDAP1L1Q96MZ0 367 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 JAKMIP1Q96N16 626 aaKnown RBP2.54□□□□□ -2
SCFD1-218ENST00000556256 NDNQ99608 321 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 GTPBP2Q9BX10 602 aaKnown RBP2.54□□□□□ -2
SCFD1-218ENST00000556256 DGCR6LQ9BY27 220 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 ATP13A3Q9H7F0 1226 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 GRPEL1Q9HAV7 217 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 CDH7Q9ULB5 785 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 NOL7Q9UMY1 257 aaKnown RBP2.54□□□□□ -2
SCFD1-218ENST00000556256 WDR37Q9Y2I8 494 aa2.54□□□□□ -2
SCFD1-218ENST00000556256 A0A1W2PPW3 197 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 OOEPA6NGQ2 149 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 F8VVB4 439 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 F8VWA3 439 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 KLF11O14901 512 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 FLRT2O43155 660 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 PPIP5K2O43314 1243 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 CDK2AP2O75956 126 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 LUC7L3O95232 432 aaKnown RBP2.53□□□□□ -2
SCFD1-218ENST00000556256 PGLSO95336 258 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 VTNP04004 478 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 SERPING1P05155 500 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 DARSP14868 501 aaKnown RBP2.53□□□□□ -2
SCFD1-218ENST00000556256 EPORP19235 508 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 TCF7P36402 384 aaPredicted RBP2.53□□□□□ -2
SCFD1-218ENST00000556256 CACNG1Q06432 222 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 ZFP36L1Q07352 338 aaKnown RBP2.53□□□□□ -2
SCFD1-218ENST00000556256 TRAP1Q12931 704 aaKnown RBP2.53□□□□□ -2
SCFD1-218ENST00000556256 SQLEQ14534 574 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 NONOQ15233 471 aaKnown RBP eCLIP2.53□□□□□ -2
SCFD1-218ENST00000556256 EXT1Q16394 746 aa2.53□□□□□ -2
SCFD1-218ENST00000556256 LRRC73Q5JTD7 316 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms