RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 NMRAL1Q9HBL8 299 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 P4HTMQ9NXG6 502 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 NUDT4Q9NZJ9 180 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 CD274Q9NZQ7 290 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 TRPC4Q9UBN4 977 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 ACOT9Q9Y305 439 aa13.03□□□□□ -0.32
SHMT2-219ENST00000555563 A0A087WUV0 522 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-219ENST00000555563 A0A096LPK6 155 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 SUPT3HB4E1H0 165 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 POC1B-GALNT4F8VUJ3 575 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 UBXN8O00124 270 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 MASP2O00187 686 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 PEX12O00623 359 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 SUPT3HO75486 399 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 IPO13O94829 963 aaKnown RBP13.02□□□□□ -0.33
SHMT2-219ENST00000555563 PDGFAP04085 211 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 S100BP04271 92 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-219ENST00000555563 ABHD2P08910 425 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 ZGLP1P0C6A0 271 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 FAM153BP0C7A2 387 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 GNAZP19086 355 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 GGT5P36269 586 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 SCTRP47872 440 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 CCL11P51671 97 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 RRADP55042 308 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 SYT16Q17RD7 645 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 FAM153CQ494X1 144 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 TEX35Q5T0J7 233 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 TCTN3Q6NUS6 607 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 SLCO4C1Q6ZQN7 724 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 MED25Q71SY5 747 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 TAOK1Q7L7X3 1001 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 CCDC91Q7Z6B0 441 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 PTRH1Q86Y79 214 aaKnown RBP13.02□□□□□ -0.33
SHMT2-219ENST00000555563 ZC3H7AQ8IWR0 971 aaKnown RBP13.02□□□□□ -0.33
SHMT2-219ENST00000555563 TBC1D19Q8N5T2 526 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 MIEF2Q96C03 454 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 AIF1LQ9BQI0 150 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 SLC25A23Q9BV35 468 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 CNOT10Q9H9A5 744 aaKnown RBP13.02□□□□□ -0.33
SHMT2-219ENST00000555563 DNAJC11Q9NVH1 559 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 C14orf105Q9NVL8 296 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 FBXL4Q9UKA2 621 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 PTBP2Q9UKA9 531 aaKnown RBP13.02□□□□□ -0.33
SHMT2-219ENST00000555563 MAP4K5Q9Y4K4 846 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 ASB1Q9Y576 335 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 HS3ST3B1Q9Y662 390 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 IKBKGQ9Y6K9 419 aa13.02□□□□□ -0.33
SHMT2-219ENST00000555563 EXOC1LA0A1B0GW35 172 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 H0YIG0 161 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 AGPSO00116 658 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SOCS6O14544 535 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 STK16O75716 305 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 CEACAM4O75871 244 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 NSA2O95478 260 aaKnown RBP13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SERPIND1P05546 499 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 TYK2P29597 1187 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 MAGEA12P43365 314 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 AVPR1BP47901 424 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 GLRBP48167 497 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SLBPQ14493 270 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT2-219ENST00000555563 RBBP7Q16576 425 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 PDK4Q16654 411 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 DCAF10Q5QP82 559 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 KIRREL2Q6UWL6 708 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 TRMT10CQ7L0Y3 403 aaKnown RBP13.01□□□□□ -0.33
SHMT2-219ENST00000555563 PRICKLE2Q7Z3G6 844 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 PDSS2Q86YH6 399 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SHISA5Q8N114 240 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SNX31Q8N9S9 440 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 ANKRD53Q8N9V6 530 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 FDCSPQ8NFU4 85 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 NT5CQ8TCD5 201 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 UBTD2Q8WUN7 234 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 DCAKDQ8WVC6 231 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 ISL2Q96A47 359 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 FER1L6-AS2Q96M78 137 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 MESP1Q9BRJ9 268 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 YIPF2Q9BWQ6 316 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 VPS11Q9H270 941 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 ANKHQ9HCJ1 492 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 MKKSQ9NPJ1 570 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SEMA3GQ9NS98 782 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 GPRC5BQ9NZH0 403 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 HCN3Q9P1Z3 774 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 ZFP69BQ9UJL9 534 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 ZNF180Q9UJW8 692 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 C3orf18Q9UK00 162 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 PCDHGA9Q9Y5G4 932 aaKnown RBP13.01□□□□□ -0.33
SHMT2-219ENST00000555563 HEMK1Q9Y5R4 338 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-219ENST00000555563 SLC22A7Q9Y694 548 aa13.01□□□□□ -0.33
SHMT2-219ENST00000555563 MED13Q9UHV7 2174 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 ZNF860A6NHJ4 632 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 A6NL46 340 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 IDSB3KWA1 339 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 SGK494L7N484 410 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 RIPK2O43353 540 aa13□□□□□ -0.33
SHMT2-219ENST00000555563 CCNT2O60583 730 aaKnown RBP13□□□□□ -0.33
SHMT2-219ENST00000555563 PRAMEF4O60810 478 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms