RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GABRR3A8MPY1 467 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 LATO43561 262 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 APBB3O95704 486 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 GSNP06396 782 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 LAMP1P11279 417 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 PKLRP30613 574 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 RPL3P39023 403 aaKnown RBP25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 RAB28P51157 221 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 RBBP5Q15291 538 aaKnown RBP25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 GCNT7Q6ZNI0 430 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 VPS37AQ8NEZ2 397 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 OR2L8Q8NGY9 312 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 MIEF2Q96C03 454 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 CENPNQ96H22 339 aaPredicted RBP25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 PANX1Q96RD7 426 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 HEBP2Q9Y5Z4 205 aa25.29■■□□□ 1.64
CCDC88C-205ENST00000553403 B3GALT4O96024 378 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 PIM1P11309 404 aaPredicted RBP25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 GABRG2P18507 467 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 HNRNPA2B1P22626 353 aaKnown RBP25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 ACSL1P33121 698 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 PRKCQQ04759 706 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 KRT33BQ14525 404 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 PHACTR4Q8IZ21 702 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 GALNT4Q8N4A0 578 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 LINC01555Q8NAE3 123 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 REEP4Q9H6H4 257 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 UBE2ZQ9H832 354 aaPredicted RBP25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 CARS2Q9HA77 564 aaKnown RBP25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 MYNNQ9NPC7 610 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 AHSPQ9NZD4 102 aa25.28■■□□□ 1.64
CCDC88C-205ENST00000553403 F5P12259 2224 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 PDZK1P1A8MUH7 402 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 EVPLLA8MZ36 301 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 CXCR6O00574 342 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 SEMA3DO95025 777 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 CLDN2P57739 230 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 PPP4R4Q6NUP7 873 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 R3HCC1LQ7Z5L2 792 aaKnown RBP25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 PACRGLQ8N7B6 248 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 WDR48Q8TAF3 677 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 FIG4Q92562 907 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 REXO5Q96IC2 774 aaKnown RBP25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 ZNF597Q96LX8 424 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 WDR92Q96MX6 357 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 PHF12Q96QT6 1004 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 NRTNQ99748 197 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 PHF7Q9BWX1 381 aaPredicted RBP25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 BHLHE41Q9C0J9 482 aaPredicted RBP25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 CD93Q9NPY3 652 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 C8orf4Q9NR00 106 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 CUEDC1Q9NWM3 386 aaPredicted RBP25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 BTBD3Q9Y2F9 522 aa25.27■■□□□ 1.64
CCDC88C-205ENST00000553403 ANKDD1BA6NHY2 528 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 TXNDC9O14530 226 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 ATP6AP1Q15904 470 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 RPE65Q16518 533 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 INTS11Q5TA45 600 aaKnown RBP25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 MARVELD2Q8N4S9 558 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 C16orf78Q8WTQ4 265 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 SNX19Q92543 992 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 AURKBQ96GD4 344 aaPredicted RBP25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 BMFQ96LC9 184 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 TBCDQ9BTW9 1192 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 UGT2B28Q9BY64 529 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 PCDHB11Q9Y5F2 797 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 GMEB1Q9Y692 573 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 C5orf42Q9H799 3197 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 VCANP13611 3396 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 TNFRSF10AO00220 468 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 NARSO43776 548 aaKnown RBP25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 KDM1AO60341 852 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 EPN2O95208 641 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 ASGR2P07307 311 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 ZCCHC18P0CG32 403 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 FAM98BQ52LJ0 330 aaKnown RBP25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 ENPP7Q6UWV6 458 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 WASH2PQ6VEQ5 465 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 ZBTB49Q6ZSB9 765 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 SERPINA11Q86U17 422 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 SLC9B2Q86UD5 537 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 OR1E3Q8WZA6 343 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 MTERF3Q96E29 417 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 PRDM8Q9NQV8 689 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 ATAD3AQ9NVI7 634 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 EXO1Q9UQ84 846 aaKnown RBP25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 AP4B1Q9Y6B7 739 aa25.26■■□□□ 1.63
CCDC88C-205ENST00000553403 CROCCQ5TZA2 2017 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 C10orf142B7Z368 130 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 CLIC1O00299 241 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 RNASET2O00584 256 aaKnown RBP25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 TNFRSF10CO14798 259 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 RETP07949 1114 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 PSMB5P28074 263 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 HTR1BP28222 390 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 AKT2P31751 481 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 CCT8P50990 548 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 PRDX1Q06830 199 aaKnown RBP25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 PDE7AQ13946 482 aa25.25■■□□□ 1.63
CCDC88C-205ENST00000553403 DEPDC1Q5TB30 811 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms