RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TRIM62Q9BVG3 475 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 MIEF1Q9NQG6 463 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 TLR8Q9NR97 1041 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ING3Q9NXR8 418 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 DNAJB9Q9UBS3 223 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 B4GALT6Q9UBX8 382 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GTF2IRD1Q9UHL9 959 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 FZD10Q9ULW2 581 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SMIM28A0A1B0GU29 152 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 FABP12A6NFH5 140 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 NIPSNAP2O75323 286 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 RFPL2O75678 378 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 APOL3O95236 402 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PGK1P00558 417 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 MT-ND2P03891 347 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 RHOCP08134 193 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CELA2BP08218 269 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PFKMP08237 780 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 VSIG8P0DPA2 414 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 UMPSP11172 480 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 MBL2P11226 248 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GLB1P16278 677 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 EPORP19235 508 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ITGALP20701 1170 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CAPN3P20807 821 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 IMPDH1P20839 514 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PTX3P26022 381 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PTGS2P35354 604 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GNPDA1P46926 289 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ALDH3A2P51648 485 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GPR85P60893 370 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SCN1BQ07699 218 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CD47Q08722 323 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SPCS2Q15005 226 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 POM121L1PQ3SYA9 428 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SLC39A12Q504Y0 691 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 NHSL2Q5HYW2 709 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 C9orf57Q5W0N0 161 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ERICH5Q6P6B1 374 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF517Q6ZMY9 492 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ANKRD13BQ86YJ7 626 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 IZUMO1Q8IYV9 350 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 LIX1Q8N485 282 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 LRRC17Q8N6Y2 441 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ASCC1Q8N9N2 400 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 VANGL1Q8TAA9 524 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PSMG2Q969U7 264 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CLIP3Q96DZ5 547 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SMARCD1Q96GM5 515 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 Q96MT0 163 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 MLPHQ9BV36 600 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 TDRD1Q9BXT4 1180 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SLC39A8Q9C0K1 460 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CDIP1Q9H305 208 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 LTB4R2Q9NPC1 389 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GPR27Q9NS67 375 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PAK1IP1Q9NWT1 392 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SLAMF8Q9P0V8 285 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SSR3Q9UNL2 185 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 STYXL1Q9Y6J8 313 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CFAP54Q96N23 3096 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ANKDD1BA6NHY2 528 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 F8W735 103 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SUV39H1O43463 412 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 DFNA5O60443 496 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 VIPP01282 170 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 LCKP06239 509 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ODC1P11926 461 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GLDCP23378 1020 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PSMA1P25786 263 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GABRB3P28472 473 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 MC4RP32245 332 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 RFC2P35250 354 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PTPN9P43378 593 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 LHX1P48742 406 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 HLCSP50747 726 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ELP6Q0PNE2 266 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CDH18Q13634 790 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 LRRC32Q14392 662 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 NFE2L1Q14494 772 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GANABQ14697 944 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SPANXN4Q5MJ08 99 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 TTC23LQ6PF05 361 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 LINGO4Q6UY18 593 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SERINC5Q86VE9 423 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 OSTM1Q86WC4 334 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 NKAPQ8N5F7 415 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ARRDC4Q8NCT1 418 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 HMGCLL1Q8TB92 370 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 TBC1D15Q8TC07 691 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SLC13A3Q8WWT9 602 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PPP3R2Q96LZ3 170 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 NECTIN4Q96NY8 510 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PPP1R2P1Q96PQ5 205 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ACAT2Q9BWD1 397 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SLC12A9Q9BXP2 914 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ANKRD60Q9BZ19 345 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CHIAQ9BZP6 476 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 MOV10Q9HCE1 1003 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CCNB1IP1Q9NPC3 277 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms