RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 MIPEPQ99797 713 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 FICDQ9BVA6 458 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 CEP41Q9BYV8 373 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 REG4Q9BYZ8 158 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 TRMT1Q9NXH9 659 aaKnown RBP8.55□□□□□ -1.04
USP28-205ENST00000537706 UBP1Q9NZI7 540 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP28-205ENST00000537706 MRFAP1Q9Y605 127 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 MAP1AP78559 2803 aaPredicted RBP8.55□□□□□ -1.04
USP28-205ENST00000537706 A0A1W2PPR1 153 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 GOLGA6L9A6NEM1 432 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 SERINC4A6NH21 518 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 ZSCAN12O43309 604 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 MYBL1P10243 752 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 PAX1P15863 534 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 OPRM1P35372 400 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 SOX18P35713 384 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 CPA2P48052 419 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 GBE1Q04446 702 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 PDK1Q15118 436 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 NOMO1Q15155 1222 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TAF1AQ15573 450 aaPredicted RBP8.54□□□□□ -1.04
USP28-205ENST00000537706 ETFDHQ16134 617 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 CLEC12BQ2HXU8 276 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 FBXO42Q6P3S6 717 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TAS2R42Q7RTR8 314 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 LACC1Q8IV20 430 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.54□□□□□ -1.04
USP28-205ENST00000537706 LINC01555Q8NAE3 123 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 MAPK1IP1LQ8NDC0 245 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 PPP1R14CQ8TAE6 165 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 RBM24Q9BX46 236 aaKnown RBP8.54□□□□□ -1.04
USP28-205ENST00000537706 FSD1LQ9BXM9 530 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TTTY12Q9BZ98 90 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TRIM7Q9C029 511 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 SHARPINQ9H0F6 387 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TAB2Q9NYJ8 693 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 ZNF226Q9NYT6 803 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 DRG1Q9Y295 367 aaKnown RBP8.54□□□□□ -1.04
USP28-205ENST00000537706 MXRA5Q9NR99 2828 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TRGV5A0A0B4J1U4 118 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 A0A0U1RQJ8 604 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 A8MVJ9 347 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 ERN1O75460 977 aaKnown RBP8.54□□□□□ -1.04
USP28-205ENST00000537706 CRTAMO95727 393 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 GYPCP04921 128 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 PGRP06401 933 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 PKMP14618 531 aaKnown RBP8.54□□□□□ -1.04
USP28-205ENST00000537706 TIMP3P35625 211 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 XCR1P46094 333 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 MPP1Q00013 466 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 DPYSL3Q14195 570 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 ABRAXAS2Q15018 415 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 SLC1A5Q15758 541 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 OTOAQ7RTW8 1153 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 OR2M7Q8NG81 312 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 OR51Q1Q8NH59 317 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.54□□□□□ -1.04
USP28-205ENST00000537706 IL1RL2Q9HB29 575 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 HPF1Q9NWY4 346 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 TMEM160Q9NX00 188 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 MYO1AQ9UBC5 1043 aa8.54□□□□□ -1.04
USP28-205ENST00000537706 ATP6AP2A0A1C7CYW4 349 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 C5orf60A6NFR6 353 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 AGAP14A8MT82 685 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 ARHGEF33A8MVX0 844 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 AHRRA9YTQ3 701 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 SLC16A5O15375 505 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 CTIFO43310 598 aaKnown RBP8.53□□□□□ -1.04
USP28-205ENST00000537706 FOXS1O43638 330 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 ATP6AP2O75787 350 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 SOX30O94993 753 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 FERP16591 822 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 IL10P22301 178 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 ACRV1P26436 265 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 CFPP27918 469 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 CEACAM8P31997 349 aaPredicted RBP8.53□□□□□ -1.04
USP28-205ENST00000537706 IDUAP35475 653 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 GJC1P36383 396 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 SSR4P51571 173 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 NR1H2P55055 460 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 OCRLQ01968 901 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 TAP2Q03519 686 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 UBAP2Q5T6F2 1119 aaKnown RBP8.53□□□□□ -1.04
USP28-205ENST00000537706 PSD4Q8NDX1 1056 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 PLPP5Q8NEB5 264 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 NEK11Q8NG66 645 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 OR2L3Q8NG85 312 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 KIF18AQ8NI77 898 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 FAM71BQ8TC56 605 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 NTNG2Q96CW9 530 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 PIK3IP1Q96FE7 263 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 IL17FQ96PD4 163 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 KCNK17Q96T54 332 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 FAM173AQ9BQD7 235 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 TSSK1BQ9BXA7 367 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 FAM96AQ9H5X1 160 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 IP6K2Q9UHH9 426 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 PPP2R2CQ9Y2T4 447 aa8.53□□□□□ -1.04
USP28-205ENST00000537706 LIPGQ9Y5X9 500 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms