RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SGPP1Q9BX95 441 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 ANKHQ9HCJ1 492 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 SUCOQ9UBS9 1254 aaKnown RBP10.71□□□□□ -0.69
VPS28-214ENST00000531032 TRMT6Q9UJA5 497 aaKnown RBP10.71□□□□□ -0.69
VPS28-214ENST00000531032 ADAMTS6Q9UKP5 1117 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 JRKLQ9Y4A0 524 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 MAD1L1Q9Y6D9 718 aa10.71□□□□□ -0.69
VPS28-214ENST00000531032 FBN2P35556 2912 aa10.71□□□□□ -0.7
VPS28-214ENST00000531032 SCN3AQ9NY46 2000 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 TRGV8A0A0C4DH27 118 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 GOLGA6L10A0A0M3HER8 536 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 FEZF1A0PJY2 475 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 OR2W5A6NFC9 320 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 SGK494L7N484 410 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 CCL21O00585 134 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 SLC16A5O15375 505 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 LCMT2O60294 686 aaKnown RBP10.7□□□□□ -0.7
VPS28-214ENST00000531032 RDH16O75452 317 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 IL10P22301 178 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 RGS4P49798 205 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 PMP22Q01453 160 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 RHAGQ02094 409 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 TUBA3CQ13748 450 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 HSP90AA5PQ58FG0 334 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 ZNF766Q5HY98 468 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 MTFR2Q6P444 385 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 TUBA3EQ6PEY2 450 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 CCDC137Q6PK04 289 aaKnown RBP10.7□□□□□ -0.7
VPS28-214ENST00000531032 AGTRAPQ6RW13 159 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 RPTNQ6XPR3 784 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 BNC2Q6ZN30 1099 aaPredicted RBP10.7□□□□□ -0.7
VPS28-214ENST00000531032 MBOAT1Q6ZNC8 495 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 ASPGQ86U10 573 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 SLC26A11Q86WA9 606 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 ZNF808Q8N4W9 903 aaPredicted RBP10.7□□□□□ -0.7
VPS28-214ENST00000531032 ZCCHC10Q8TBK6 192 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 M1APQ8TC57 530 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 EEF1AKMT1Q8WVE0 214 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 SLC13A3Q8WWT9 602 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 MS4A14Q96JA4 679 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 PBKQ96KB5 322 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 ZNF354BQ96LW1 612 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 OR1F2PQ96R84 312 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 NDNQ99608 321 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 SARGQ9BW04 601 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 ATG10Q9H0Y0 220 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 PARVBQ9HBI1 364 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 MMP25Q9NPA2 562 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 IARS2Q9NSE4 1012 aaKnown RBP10.7□□□□□ -0.7
VPS28-214ENST00000531032 TAS2R13Q9NYV9 303 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 SLC22A7Q9Y694 548 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 OTOGQ6ZRI0 2925 aa10.7□□□□□ -0.7
VPS28-214ENST00000531032 A8MUI8 341 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 PGRMC1O00264 195 aaKnown RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 SLC19A2O60779 497 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 WISP2O76076 250 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 SLC35G6P0C7Q6 338 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 CDH1P12830 882 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 NPPBP16860 134 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 PGAM1P18669 254 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 GABRB3P28472 473 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 GRNP28799 593 aaKnown RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 GRK3P35626 688 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 SRSF11Q05519 484 aaKnown RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 RBPJQ06330 500 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 DHX9Q08211 1270 aaKnown RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 NAE1Q13564 534 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 NAA30Q147X3 362 aaPredicted RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 CRYMQ14894 314 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 ABRAXAS2Q15018 415 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 HERC3Q15034 1050 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 PHKG1Q16816 387 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 MEP1AQ16819 746 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 ZXDCQ2QGD7 858 aaPredicted RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 FCRLBQ6BAA4 426 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 CAPN13Q6MZZ7 669 aaPredicted RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 PAPD4Q6PIY7 484 aaKnown RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 PAQR3Q6TCH7 311 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 LCTLQ6UWM7 567 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 MRGPRGQ86SM5 289 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 CRLF3Q8IUI8 442 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 MCEMP1Q8IX19 187 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 PPIL6Q8IXY8 311 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 MYO1HQ8N1T3 1032 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 AFAP1L2Q8N4X5 818 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 MFSD9Q8NBP5 474 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 PLPP5Q8NEB5 264 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 ABHD11Q8NFV4 315 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 THAP3Q8WTV1 239 aaPredicted RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 SCMH1Q96GD3 660 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 SIGLEC12Q96PQ1 595 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 NPAS2Q99743 824 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 RUBCNLQ9H714 662 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 KCNK13Q9HB14 408 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 LANCL2Q9NS86 450 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 NAALAD2Q9Y3Q0 740 aa10.69□□□□□ -0.7
VPS28-214ENST00000531032 NCOA6Q14686 2063 aaPredicted RBP10.69□□□□□ -0.7
VPS28-214ENST00000531032 CSMD2Q7Z408 3487 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 ASPDHA6ND91 283 aa10.68□□□□□ -0.7
VPS28-214ENST00000531032 MAGEB17A8MXT2 336 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms