RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CCDC80Q76M96 950 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 C9orf43Q8TAL5 461 aaPredicted RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 SMPDL3AQ92484 453 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 C5orf34Q96MH7 638 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 TMEM175Q9BSA9 504 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 HERC2P3Q9BVR0 1158 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 MED28Q9H204 178 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 TUBA8Q9NY65 449 aaPredicted RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 EBF1Q9UH73 591 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 PCDHB3Q9Y5E6 796 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 PCDHGA7Q9Y5G6 932 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 NAV1Q8NEY1 1877 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 LEFTY2O00292 366 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 APOL3O95236 402 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 RASAL1O95294 804 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 ZNF865P0CJ78 1059 aaPredicted RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 SLC15A1P46059 708 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 OR2B6P58173 313 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 LMAN2Q12907 356 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 AKIRIN2Q53H80 203 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 TMEM236Q5W0B7 351 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 GRASPQ7Z6J2 395 aaPredicted RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 SIX5Q8N196 739 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 CENPSQ8N2Z9 138 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 PIGKQ92643 395 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 IGSF21Q96ID5 467 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 PRICKLE1Q96MT3 831 aaPredicted RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 TRNT1Q96Q11 434 aaKnown RBP12.28□□□□□ -0.44
USP53-209ENST00000514665 GAL3ST4Q96RP7 486 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 CXCL16Q9H2A7 254 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 P2RX2Q9UBL9 471 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 RNF6Q9Y252 685 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 PCDHGA4Q9Y5G9 962 aa12.28□□□□□ -0.44
USP53-209ENST00000514665 A6NHS1 94 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 FAM25EA8MYX2 175 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 DENRO43583 198 aaKnown RBP12.27□□□□□ -0.44
USP53-209ENST00000514665 PSKH1P11801 424 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 PRDX3P30048 256 aaKnown RBP12.27□□□□□ -0.44
USP53-209ENST00000514665 PGDP52209 483 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 SLC13A2Q13183 592 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 RPTNQ6XPR3 784 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 HMGN2P46Q86SG4 172 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 LRRTM4Q86VH4 590 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 OR8J3Q8NGG0 315 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 OR8H1Q8NGG4 311 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 SORCS1Q8WY21 1168 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 HDAC2Q92769 488 aaKnown RBP12.27□□□□□ -0.44
USP53-209ENST00000514665 SMIM14Q96QK8 99 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 UCK2Q9BZX2 261 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 KCNH6Q9H252 994 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 GSTO2Q9H4Y5 243 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 ERVK-18Q9QC07 812 aa12.27□□□□□ -0.44
USP53-209ENST00000514665 ZBTB42B2RXF5 422 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 H7BY64 318 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 LEFTY1O75610 366 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 ZNF30P17039 623 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 TCEA1P23193 301 aaKnown RBP12.27□□□□□ -0.45
USP53-209ENST00000514665 PAGE3Q5JUK9 113 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 ENPP6Q6UWR7 440 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 ASB18Q6ZVZ8 466 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 PIANPQ8IYJ0 282 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 SLC5A11Q8WWX8 675 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 PRAP1Q96NZ9 151 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 RANBP9Q96S59 729 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 PCTPQ9UKL6 214 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 UTS2RQ9UKP6 389 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 TIAM2Q8IVF5 1701 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 MYH9P35579 1960 aaKnown RBP12.27□□□□□ -0.45
USP53-209ENST00000514665 CLDN4O14493 209 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 NDUFS4O43181 175 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 HMGCLP35914 325 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 ZNF763Q0D2J5 394 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 LSAMPQ13449 338 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 LDLRAD1Q5T700 205 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 ARL9Q6T311 187 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 ZBED3Q96IU2 234 aaPredicted RBP12.27□□□□□ -0.45
USP53-209ENST00000514665 HCN4Q9Y3Q4 1203 aa12.27□□□□□ -0.45
USP53-209ENST00000514665 LAMB4A4D0S4 1761 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 GPR39O43194 453 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 MT-ND2P03891 347 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ADH5P11766 374 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 S100A1P23297 94 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 MARCH8Q5T0T0 291 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 TSPAN33Q86UF1 283 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 JAZF1Q86VZ6 243 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 MARCH9Q86YJ5 346 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 GATA6Q92908 595 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 PMEPA1Q969W9 287 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 KCNN2Q9H2S1 579 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ZNF696Q9H7X3 374 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 XKRYO14609 159 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 SOCS5O75159 536 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 EEDO75530 441 aaKnown RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 SOD2P04179 222 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 RPP38P78345 283 aaKnown RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 ST3GAL4Q11206 333 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 MYBPC3Q14896 1274 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ZNF630Q2M218 657 aaPredicted RBP12.26□□□□□ -0.45
USP53-209ENST00000514665 SLC8B1Q6J4K2 584 aa12.26□□□□□ -0.45
USP53-209ENST00000514665 ENPP7Q6UWV6 458 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms