RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PANX3Q96QZ0 392 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 OR2A14Q96R47 310 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 NLNQ9BYT8 704 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 KLHL4Q9C0H6 718 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 P2RY12Q9H244 342 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 AKIRIN1Q9H9L7 192 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 CATSPERZQ9NTU4 200 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 FAIMQ9NVQ4 179 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SOHLH2Q9NX45 425 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 GIN1Q9NXP7 522 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ACTR10Q9NZ32 417 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PSMC3IPQ9P2W1 217 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 RAB26Q9ULW5 256 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ICKQ9UPZ9 632 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 MRPS18BQ9Y676 258 aaKnown RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 AP1M2Q9Y6Q5 423 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 A0A0J9YVX5 310 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 EXOC1LA0A1B0GW35 172 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SH3PXD2BA1X283 911 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SERTM1A2A2V5 107 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SMIM23A6NLE4 172 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 E7EQ34 232 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 E9PBE3 544 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 H0Y3Z8 333 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 MKRN2OSH3BPM6 223 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 CASQ2O14958 399 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 DENRO43583 198 aaKnown RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 NDUFS3O75489 264 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 WISP1O95388 367 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 CHRM5P08912 532 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 FURINP09958 794 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 EPXP11678 715 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 MLNP12872 115 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 CD9P21926 228 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 TTKP33981 857 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 RORAP35398 523 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ARCN1P48444 511 aaKnown RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 CSRP3P50461 194 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 RAB28P51157 221 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ARFIP2P53365 341 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 NR1H2P55055 460 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ITGA1P56199 1179 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SESN2P58004 480 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 BASP1P80723 227 aaKnown RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 HSPA14Q0VDF9 509 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 INAQ16352 499 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 NDUFA5Q16718 116 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 UGT8Q16880 541 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 LONRF1Q17RB8 773 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SLC5A12Q1EHB4 618 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 KLHL38Q2WGJ6 581 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ZNF789Q5FWF6 425 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 PTRHD1Q6GMV3 140 aaKnown RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 MRNIPQ6NTE8 343 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 TCTN3Q6NUS6 607 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 FAM199XQ6PEV8 388 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 TTC23LQ6PF05 361 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 IZUMO2Q6UXV1 221 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 LINC00114Q6XXX2 140 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 PCGF5Q86SE9 256 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SCUBE1Q8IWY4 988 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SRRM1Q8IYB3 904 aaKnown RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 GPR135Q8IZ08 494 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 MCUQ8NE86 351 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 OR1L3Q8NH93 324 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 PPP1R14CQ8TAE6 165 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 FLVCR1-AS1Q8TAF5 88 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 C9orf43Q8TAL5 461 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 FNDC8Q8TC99 324 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 MR1Q95460 341 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 CLIP3Q96DZ5 547 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 PPM1MQ96MI6 270 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 MDFIQ99750 246 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 C17orf62Q9BQA9 187 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 HGH1Q9BTY7 390 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ACTL8Q9H568 366 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 XKR8Q9H6D3 395 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ZNF696Q9H7X3 374 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 PLGRKTQ9HBL7 147 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 C6orf203Q9P0P8 240 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ASIC3Q9UHC3 531 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 GNPTGQ9UJJ9 305 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 ANAPC2Q9UJX6 822 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 TRIM33Q9UPN9 1127 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 CDYLQ9Y232 598 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 GPC6Q9Y625 555 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-207ENST00000507401 SEC16AO15027 2179 aa7.71□□□□□ -1.18
SCN1A-207ENST00000507401 A0A0J9YY10 115 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 SDR42E2A6NKP2 422 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 TMEM150CB9EJG8 249 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 H3BMH7 237 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 H3BMM5 538 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 ZNF749O43361 778 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 KRT36O76013 467 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 VAPBO95292 243 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 FKBP9O95302 570 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 CLPTM1O96005 669 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 UGT2B7P16662 529 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 ZNF24P17028 368 aa7.7□□□□□ -1.18
SCN1A-207ENST00000507401 CYP2A7P20853 494 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms