RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 CPNE5Q9HCH3 593 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 ZNF304Q9HCX3 659 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 C14orf105Q9NVL8 296 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 LGALS13Q9UHV8 139 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 ADGRE2Q9UHX3 823 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 GRID1Q9ULK0 1009 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 STK38LQ9Y2H1 464 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 SLC22A7Q9Y694 548 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 CELSR3Q9NYQ7 3312 aa13.95□□□□□ -0.18
LIMS3-205ENST00000487150 FEZF1A0PJY2 475 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 ANKDD1BA6NHY2 528 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 PCDH17O14917 1159 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 NSA2O95478 260 aaKnown RBP13.94□□□□□ -0.18
LIMS3-205ENST00000487150 IGHEP01854 428 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 SERPINA6P08185 405 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 CYC1P08574 325 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 GMPRP36959 345 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 HNF4AP41235 474 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 FOLR3P41439 243 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 CASP2P42575 452 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 KCNC1P48547 511 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 OCA2Q04671 838 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 TGM3Q08188 693 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 UGT8Q16880 541 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 SDK2Q58EX2 2172 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 TMEM214Q6NUQ4 689 aaKnown RBP13.94□□□□□ -0.18
LIMS3-205ENST00000487150 C19orf48Q6RUI8 117 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 TEX9Q8N6V9 391 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 ENDOVQ8N8Q3 282 aaKnown RBP13.94□□□□□ -0.18
LIMS3-205ENST00000487150 RDH11Q8TC12 318 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 COL26A1Q96A83 441 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 TM4SF19Q96DZ7 209 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 CENPKQ9BS16 269 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 ACTR8Q9H981 624 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 ANKHQ9HCJ1 492 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 PRM3Q9NNZ6 103 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 STARD5Q9NSY2 213 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 GEMIN8Q9NWZ8 242 aaKnown RBP13.94□□□□□ -0.18
LIMS3-205ENST00000487150 MKS1Q9NXB0 559 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 ZNF282Q9UDV7 671 aaPredicted RBP13.94□□□□□ -0.18
LIMS3-205ENST00000487150 TCFL5Q9UL49 500 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 LHX6Q9UPM6 363 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 POLHQ9Y253 713 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 PLAAQ9Y263 795 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 MAP4K5Q9Y4K4 846 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 USP24Q9UPU5 2620 aa13.94□□□□□ -0.18
LIMS3-205ENST00000487150 TLDC2A0PJX2 215 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 GOLGA8RI6L899 631 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 COPEO14579 308 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 SERPIND1P05546 499 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 CTSBP07858 339 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 KRT4P19013 534 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 ATP5F1P24539 256 aaPredicted RBP13.93□□□□□ -0.18
LIMS3-205ENST00000487150 EEF1DP29692 281 aaKnown RBP13.93□□□□□ -0.18
LIMS3-205ENST00000487150 CRHR1P34998 444 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 AGTR2P50052 363 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 CHIT1Q13231 466 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 GTF2H2Q13888 395 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 E2F2Q14209 437 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 HKDC1Q2TB90 917 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 C18orf21Q32NC0 220 aaPredicted RBP13.93□□□□□ -0.18
LIMS3-205ENST00000487150 MLIPQ5VWP3 458 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 LIPJQ5W064 366 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 GRHL2Q6ISB3 625 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 GTF2H2CQ6P1K8 395 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 MED27Q6P2C8 311 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 FAM199XQ6PEV8 388 aaPredicted RBP13.93□□□□□ -0.18
LIMS3-205ENST00000487150 OVCH1Q7RTY7 1134 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 SRFBP1Q8NEF9 429 aaKnown RBP13.93□□□□□ -0.18
LIMS3-205ENST00000487150 OR2Y1Q8NGV0 311 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 PHF21BQ96EK2 531 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 PKNOX2Q96KN3 472 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 STMN4Q9H169 189 aaPredicted RBP13.93□□□□□ -0.18
LIMS3-205ENST00000487150 MKKSQ9NPJ1 570 aaPredicted RBP13.93□□□□□ -0.18
LIMS3-205ENST00000487150 IL17BQ9UHF5 180 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 PCDHGA11Q9Y5H2 935 aa13.93□□□□□ -0.18
LIMS3-205ENST00000487150 A8MT66 165 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 ERVH48-1M5A8F1 160 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 E2F3O00716 465 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 P2RX6O15547 441 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 CLEC3AO75596 197 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 OTCP00480 354 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 MYZAPP0CAP1 466 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 IL10P22301 178 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 VARSP26640 1264 aaKnown RBP13.92□□□□□ -0.18
LIMS3-205ENST00000487150 ARL1P40616 181 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-205ENST00000487150 HERVK_113P63132 956 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 MEF2AQ02078 507 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-205ENST00000487150 DOC2AQ14183 400 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 KRT71Q3SY84 523 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 FBXO48Q5FWF7 155 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 MRPL14Q6P1L8 145 aaKnown RBP13.92□□□□□ -0.18
LIMS3-205ENST00000487150 MYLK4Q86YV6 388 aaPredicted RBP13.92□□□□□ -0.18
LIMS3-205ENST00000487150 HOMEZQ8IX15 550 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.92□□□□□ -0.18
LIMS3-205ENST00000487150 ARHGEF39Q8N4T4 335 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 PPP4R1Q8TF05 950 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 ATP6V1E2Q96A05 226 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 ESAMQ96AP7 390 aa13.92□□□□□ -0.18
LIMS3-205ENST00000487150 MMABQ96EY8 250 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms