RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SLC26A3P40879 764 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SLCO1A2P46721 670 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 HSPA7P48741 367 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 RAP1GDS1P52306 607 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PGGT1BP53609 377 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 ARF3P61204 181 aaPredicted RBP7.68□□□□□ -1.18
USP40-216ENST00000485943 STXBP1P61764 594 aaKnown RBP7.68□□□□□ -1.18
USP40-216ENST00000485943 CYP4F2P78329 520 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 CDC20Q12834 499 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SLC29A2Q14542 456 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 ACAP2Q15057 778 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 RBBP7Q16576 425 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PFKFB4Q16877 469 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PRAMEF17Q5VTA0 474 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 RHBDD2Q6NTF9 364 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 FAM199XQ6PEV8 388 aaPredicted RBP7.68□□□□□ -1.18
USP40-216ENST00000485943 INO80CQ6PI98 192 aaPredicted RBP7.68□□□□□ -1.18
USP40-216ENST00000485943 RIPOR1Q6ZS17 1223 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 LRRC70Q7Z2Q7 622 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SYVN1Q86TM6 617 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PLD3Q8IV08 490 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PRSS58Q8IYP2 241 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 DSELQ8IZU8 1212 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 DNAJC22Q8N4W6 341 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 CLEC1AQ8NC01 280 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 TRPV3Q8NET8 790 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SLC44A1Q8WWI5 657 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 KIAA1191Q96A73 305 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 MIEF2Q96C03 454 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 NXNL1Q96CM4 212 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 REPS1Q96D71 796 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SLC45A3Q96JT2 553 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 IP6K3Q96PC2 410 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 CHRNA10Q9GZZ6 450 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 ACTL8Q9H568 366 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 L2HGDHQ9H9P8 463 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PELI2Q9HAT8 420 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 FAM60AQ9NP50 221 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SLC6A20Q9NP91 592 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SEMA5BQ9P283 1151 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 TRPC4Q9UBN4 977 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 ZNF282Q9UDV7 671 aaPredicted RBP7.68□□□□□ -1.18
USP40-216ENST00000485943 MID2Q9UJV3 735 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 ZNF180Q9UJW8 692 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SPACA6W5XKT8 324 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 COL27A1Q8IZC6 1860 aaPredicted RBP7.68□□□□□ -1.18
USP40-216ENST00000485943 CHD8Q9HCK8 2581 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 MDC1Q14676 2089 aaKnown RBP7.67□□□□□ -1.18
USP40-216ENST00000485943 CEP295Q9C0D2 2601 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 FEZF1A0PJY2 475 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 CCDC189A1A4V9 331 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 OR2A25A4D2G3 310 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 MKRN2OSH3BPM6 223 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 UBXN8O00124 270 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 TP73O15350 636 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 TIAF1O95411 115 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 RAB40ALP0C0E4 278 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 ERGP11308 486 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 COL6A2P12110 1019 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 HNF4AP41235 474 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 CCT5P48643 541 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 TNP2Q05952 138 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 GPS2Q13227 327 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 DDX39BQ13838 428 aaKnown RBP7.67□□□□□ -1.18
USP40-216ENST00000485943 RCN2Q14257 317 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 GRB7Q14451 532 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 HERC3Q15034 1050 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 NCF4Q15080 339 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 ZIC1Q15915 447 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 MINDY4Q4G0A6 757 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 NKAIN1Q4KMZ8 207 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 CFAP157Q5JU67 520 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 CDKL4Q5MAI5 379 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 GARNL3Q5VVW2 1013 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 FCRL6Q6DN72 434 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 EMBQ6PCB8 327 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 FIGNL1Q6PIW4 674 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 NXPE4Q6UWF7 544 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 SBSNQ6UWP8 590 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 RNF44Q7L0R7 432 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 PAQR7Q86WK9 346 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 DTX1Q86Y01 620 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 GOLGA6L1Q8N7Z2 621 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 ANKRD49Q8WVL7 239 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 APOBEC4Q8WW27 367 aaKnown RBP7.67□□□□□ -1.18
USP40-216ENST00000485943 THAP4Q8WY91 577 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 MVB12AQ96EY5 273 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 FER1L6-AS2Q96M78 137 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 LRFN5Q96NI6 719 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 CRB3Q9BUF7 120 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 EFCAB11Q9BUY7 163 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 ACTR8Q9H981 624 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 GPRC5BQ9NZH0 403 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 GMPR2Q9P2T1 348 aaKnown RBP7.67□□□□□ -1.18
USP40-216ENST00000485943 MED16Q9Y2X0 877 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 MRPS18BQ9Y676 258 aaKnown RBP7.67□□□□□ -1.18
USP40-216ENST00000485943 AHCTF1Q8WYP5 2266 aa7.67□□□□□ -1.18
USP40-216ENST00000485943 SPEGQ15772 3267 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 IGF2RP11717 2491 aa7.66□□□□□ -1.18
USP40-216ENST00000485943 A0A1W2PPV9 198 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms