RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PTGS2P35354 604 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 SKP1P63208 163 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 HSF1Q00613 529 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 TAP2Q03519 686 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 USP10Q14694 798 aaKnown RBP11.85□□□□□ -0.51
SKA3-206ENST00000475251 ABRAXAS2Q15018 415 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 NSDHLQ15738 373 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 KLHL38Q2WGJ6 581 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 C3P1Q6ZMU1 363 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 RPS19BP1Q86WX3 136 aaKnown RBP11.85□□□□□ -0.51
SKA3-206ENST00000475251 CCDC89Q8N998 374 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 LRRC57Q8N9N7 239 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 PLPP5Q8NEB5 264 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 ZNF480Q8WV37 535 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 BIRC8Q96P09 236 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 NPAS2Q99743 824 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 TP63Q9H3D4 680 aaPredicted RBP11.85□□□□□ -0.51
SKA3-206ENST00000475251 KCNJ16Q9NPI9 418 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 TMEM184CQ9NVA4 438 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 BFARQ9NZS9 450 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 HCN3Q9P1Z3 774 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 PAK5Q9P286 719 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 KCNN3Q9UGI6 736 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 DRG1Q9Y295 367 aaKnown RBP11.85□□□□□ -0.51
SKA3-206ENST00000475251 KLF13Q9Y2Y9 288 aaPredicted RBP11.85□□□□□ -0.51
SKA3-206ENST00000475251 EPN1Q9Y6I3 576 aaPredicted RBP11.85□□□□□ -0.51
SKA3-206ENST00000475251 HEATR5BQ9P2D3 2071 aa11.85□□□□□ -0.51
SKA3-206ENST00000475251 GRID2IPA4D2P6 1211 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 MAGEB17A8MXT2 336 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 H7BY64 318 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 FCHO1O14526 889 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 PRMT3O60678 531 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 NIPSNAP2O75323 286 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 FAM155BO75949 473 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 SYF2O95926 243 aaKnown RBP11.84□□□□□ -0.51
SKA3-206ENST00000475251 IL1RNP18510 177 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 JAK1P23458 1154 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 NPY2RP49146 381 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 SLC26A5P58743 744 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 PPP2R2AP63151 447 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 MPP1Q00013 466 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 TYSND1Q2T9J0 566 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 ACSBG2Q5FVE4 666 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 TMEM214Q6NUQ4 689 aaKnown RBP11.84□□□□□ -0.51
SKA3-206ENST00000475251 NIPAL1Q6NVV3 410 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 CD163Q86VB7 1156 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 PLD3Q8IV08 490 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 CHERPQ8IWX8 916 aaKnown RBP11.84□□□□□ -0.51
SKA3-206ENST00000475251 DMRTC2Q8IXT2 367 aaPredicted RBP11.84□□□□□ -0.51
SKA3-206ENST00000475251 CPSF7Q8N684 471 aaKnown RBP11.84□□□□□ -0.51
SKA3-206ENST00000475251 AMER2Q8N7J2 671 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 PPFIBP2Q8ND30 876 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 LILRB4Q8NHJ6 448 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 LPGAT1Q92604 370 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 RND1Q92730 232 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 NINJ1Q92982 152 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 PRAP1Q96NZ9 151 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 PCBD2Q9H0N5 130 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 CDCP1Q9H5V8 836 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 TRIM45Q9H8W5 580 aaPredicted RBP11.84□□□□□ -0.51
SKA3-206ENST00000475251 EIF2B3Q9NR50 452 aaKnown RBP11.84□□□□□ -0.51
SKA3-206ENST00000475251 ABCF3Q9NUQ8 709 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 ZNF148Q9UQR1 794 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 DUSP10Q9Y6W6 482 aa11.84□□□□□ -0.51
SKA3-206ENST00000475251 GTF3C1Q12789 2109 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 SGK494L7N484 410 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 LIASO43766 372 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 ZBTB14O43829 449 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 MAN1A2O60476 641 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 ZWINTO95229 277 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 VAPBO95292 243 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 SLC35G6P0C7Q6 338 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 OGNP20774 298 aaKnown RBP11.83□□□□□ -0.52
SKA3-206ENST00000475251 MSX1P28360 303 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 TPP2P29144 1249 aaPredicted RBP11.83□□□□□ -0.52
SKA3-206ENST00000475251 GRK3P35626 688 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 SESN2P58004 480 aaPredicted RBP11.83□□□□□ -0.52
SKA3-206ENST00000475251 OR4D2P58180 307 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 MEF2AQ02078 507 aaPredicted RBP11.83□□□□□ -0.52
SKA3-206ENST00000475251 FOLH1Q04609 750 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 HERC3Q15034 1050 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 OASLQ15646 514 aaKnown RBP11.83□□□□□ -0.52
SKA3-206ENST00000475251 ARHGAP11AQ6P4F7 1023 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 PAOXQ6QHF9 649 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 CEP128Q6ZU80 1094 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 VN1R4Q7Z5H5 301 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 REXO1L1PQ8IX06 675 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 CLYBLQ8N0X4 340 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 TXLNBQ8N3L3 684 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 ELP5Q8TE02 316 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 ATG4AQ8WYN0 398 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 FAM136AQ96C01 138 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 FOXC2Q99958 501 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 TMUB1Q9BVT8 246 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 CCDC177Q9NQR7 707 aaPredicted RBP11.83□□□□□ -0.52
SKA3-206ENST00000475251 KLHL42Q9P2K6 505 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 EDARQ9UNE0 448 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 CRYL1Q9Y2S2 319 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 SLC22A7Q9Y694 548 aa11.83□□□□□ -0.52
SKA3-206ENST00000475251 ITPR3Q14573 2671 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms