RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MED18Q9BUE0 208 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 SLC25A51Q9H1U9 297 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 HPF1Q9NWY4 346 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 RUVBL1Q9Y265 456 aaKnown RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 DRG1Q9Y295 367 aaKnown RBP7.46□□□□□ -1.22
USP54-211ENST00000474929 SPO11Q9Y5K1 396 aa7.46□□□□□ -1.22
USP54-211ENST00000474929 A0A0A6YYC8 382 aaPredicted RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 OR2A25A4D2G3 310 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 MBD3L3A6NE82 208 aaPredicted RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 CD8B2A6NJW9 211 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 C2orf81A6NN90 581 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 I3L1I5 382 aaPredicted RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 AP2A2O94973 939 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 NSA2O95478 260 aaKnown RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 EPOP01588 193 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 ACADLP28330 430 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 XCR1P46094 333 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 MTIF2P46199 727 aaKnown RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 ST13P50502 369 aaKnown RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 SSR4P51571 173 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 OR4D2P58180 307 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 SRSF2Q01130 221 aaKnown RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 TBL3Q12788 808 aaKnown RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 KRT81Q14533 505 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 MAN2A1Q16706 1144 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 KLHDC7AQ5VTJ3 777 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 CYB5R2Q6BCY4 276 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 ABHD17CQ6PCB6 329 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 TTC23LQ6PF05 361 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 CREBRFQ8IUR6 639 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 TMEM251Q8N6I4 163 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 LINC01555Q8NAE3 123 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 CCNYQ8ND76 341 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 PLPP5Q8NEB5 264 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 MBD3L2Q8NHZ7 208 aaPredicted RBP7.45□□□□□ -1.22
USP54-211ENST00000474929 FAM71BQ8TC56 605 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 SLC22A8Q8TCC7 542 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 CAVIN3Q969G5 261 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 TNFRSF13CQ96RJ3 184 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 C19orf43Q9BQ61 176 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 RHNO1Q9BSD3 238 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 QPCTLQ9NXS2 382 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 SLC39A10Q9ULF5 831 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 PCDHA13Q9Y5I0 950 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 RYR3Q15413 4870 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 TRRAPQ9Y4A5 3859 aa7.45□□□□□ -1.22
USP54-211ENST00000474929 LOC105369274A0A096LPK9 316 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 LOC102723532A0A0G2JNH3 316 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 SAGE2PA6NJ88 616 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 AGAP14A8MT82 685 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 H0YGG7 62 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 GFPT2O94808 682 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 JAK1P23458 1154 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 CMPK1P30085 196 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 CLCN2P51788 898 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 DSCR9P59020 149 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 ARF3P61204 181 aaPredicted RBP7.44□□□□□ -1.22
USP54-211ENST00000474929 SYT16Q17RD7 645 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 GPR33Q49SQ1 333 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 FAM166AQ6J272 317 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 LRRC8BQ6P9F7 803 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 MDGA2Q7Z553 956 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 ELOA2Q8IYF1 753 aaPredicted RBP7.44□□□□□ -1.22
USP54-211ENST00000474929 OR4N4Q8N0Y3 316 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.44□□□□□ -1.22
USP54-211ENST00000474929 GOLM1Q8NBJ4 401 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 PPHLN1Q8NEY8 458 aaKnown RBP7.44□□□□□ -1.22
USP54-211ENST00000474929 OR2L3Q8NG85 312 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 BLOC1S5Q8TDH9 187 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 SYN2Q92777 582 aaPredicted RBP7.44□□□□□ -1.22
USP54-211ENST00000474929 KIAA1191Q96A73 305 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 TADA1Q96BN2 335 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 ART5Q96L15 291 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 HS6ST2Q96MM7 605 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 CCDC77Q9BR77 488 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 CNPPD1Q9BV87 410 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 SLCO5A1Q9H2Y9 848 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 PCDH18Q9HCL0 1135 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 ZDHHC3Q9NYG2 299 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 SAMD15Q9P1V8 674 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 PLAGL1Q9UM63 463 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 YARS2Q9Y2Z4 477 aaKnown RBP7.44□□□□□ -1.22
USP54-211ENST00000474929 SCINQ9Y6U3 715 aa7.44□□□□□ -1.22
USP54-211ENST00000474929 PRKDCP78527 4128 aaKnown RBP7.43□□□□□ -1.22
USP54-211ENST00000474929 IGLV3-16A0A075B6K0 115 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 ATP6AP2A0A1C7CYW4 349 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 FAM157AC9JC47 383 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 HS3ST1O14792 307 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 FOXS1O43638 330 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 ATP6AP2O75787 350 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 TMIGD3P0DMS9 266 aaPredicted RBP7.43□□□□□ -1.22
USP54-211ENST00000474929 EZRP15311 586 aaKnown RBP7.43□□□□□ -1.22
USP54-211ENST00000474929 ITGA2P17301 1181 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 CHRNB2P17787 502 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 CNR1P21554 472 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 SKP1P63208 163 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 MAT1AQ00266 395 aaKnown RBP7.43□□□□□ -1.22
USP54-211ENST00000474929 LOXL1Q08397 574 aaPredicted RBP7.43□□□□□ -1.22
USP54-211ENST00000474929 SCGB2A2Q13296 93 aa7.43□□□□□ -1.22
USP54-211ENST00000474929 MAMLD1Q13495 774 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms