RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TMCC2O75069 709 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 PRSS23O95084 383 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 SNX4O95219 450 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 OXSR1O95747 527 aaPredicted RBP11.46□□□□□ -0.57
MSH6-204ENST00000445503 ITGA2P17301 1181 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 PPM1FP49593 454 aaPredicted RBP11.46□□□□□ -0.57
MSH6-204ENST00000445503 PPIGQ13427 754 aaKnown RBP eCLIP11.46□□□□□ -0.57
MSH6-204ENST00000445503 INAVAQ3KP66 663 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 CATSPEREQ5SY80 951 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 DPY19L3Q6ZPD9 716 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 PRSS48Q7RTY5 328 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 AQP11Q8NBQ7 271 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 MTERF3Q96E29 417 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 PDLIM5Q96HC4 596 aaKnown RBP11.46□□□□□ -0.57
MSH6-204ENST00000445503 MROQ9BYG7 248 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 A0A0G2JN53 185 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 CCNB2O95067 398 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 GABARAPO95166 117 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 ASMTP46597 345 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 GSTM4Q03013 218 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 CNTN1Q12860 1018 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 TMEM220Q6QAJ8 160 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 CCBE1Q6UXH8 406 aaPredicted RBP11.46□□□□□ -0.57
MSH6-204ENST00000445503 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.46□□□□□ -0.57
MSH6-204ENST00000445503 DNAJC27Q9NZQ0 273 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 ZNF639Q9UID6 485 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 TMEFF2Q9UIK5 374 aaPredicted RBP11.46□□□□□ -0.57
MSH6-204ENST00000445503 B3GNT3Q9Y2A9 372 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 KLHL20Q9Y2M5 609 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 TRIM64CA6NLI5 447 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 H3BM21 787 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 PCDHGA12O60330 932 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 DNAJB5O75953 348 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 APOL3O95236 402 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 IGLV3-27P01718 113 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 AMD1P17707 334 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 PPIBP23284 216 aaKnown RBP11.46□□□□□ -0.58
MSH6-204ENST00000445503 LIPAP38571 399 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 MASP1P48740 699 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 OXA1LQ15070 435 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 KCNJ8Q15842 424 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 SLC16A12Q6ZSM3 486 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 SPATC1Q76KD6 591 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 RNF130Q86XS8 419 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 FAM83FQ8NEG4 500 aaPredicted RBP11.46□□□□□ -0.58
MSH6-204ENST00000445503 ZNF461Q8TAF7 563 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 ISG20Q96AZ6 181 aaKnown RBP11.46□□□□□ -0.58
MSH6-204ENST00000445503 MMP27Q9H306 513 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 FAM120CQ9NX05 1096 aaKnown RBP11.46□□□□□ -0.58
MSH6-204ENST00000445503 CORO2BQ9UQ03 480 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 ANGPT4Q9Y264 503 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 PCDHB11Q9Y5F2 797 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 AP2A2O94973 939 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 KLK1P06870 262 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 HOXD10P28358 340 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 FEN1P39748 380 aaKnown RBP11.46□□□□□ -0.58
MSH6-204ENST00000445503 ST8SIA6P61647 398 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 RPS26P62854 115 aaKnown RBP11.46□□□□□ -0.58
MSH6-204ENST00000445503 TCEA2Q15560 299 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 MPPE1Q53F39 396 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 MED27Q6P2C8 311 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 TRIM46Q7Z4K8 759 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 FCGR1BQ92637 280 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 SGIP1Q9BQI5 828 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 PRRG3Q9BZD7 231 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 TIGARQ9NQ88 270 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 INIPQ9NRY2 104 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 MALT1Q9UDY8 824 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 TMED5Q9Y3A6 229 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 PEX16Q9Y5Y5 336 aa11.46□□□□□ -0.58
MSH6-204ENST00000445503 TRBC2A0A5B9 178 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 PRR23AA6NEV1 266 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 SLC16A6O15403 523 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 IFNW1P05000 195 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 ANXA8P13928 327 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 ACPPP15309 386 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 HNMTP50135 292 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 OR2B6P58173 313 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 OLR1P78380 273 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 HSPB3Q12988 150 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 SLBPQ14493 270 aaKnown RBP eCLIP11.45□□□□□ -0.58
MSH6-204ENST00000445503 PROX2Q3B8N5 592 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 ATAD3BQ5T9A4 648 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 CACTIN-AS1Q8N1I8 211 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 CYB5D2Q8WUJ1 264 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 POP5Q969H6 163 aaKnown RBP11.45□□□□□ -0.58
MSH6-204ENST00000445503 TADA1Q96BN2 335 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 DOHHQ9BU89 302 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 MTG2Q9H4K7 406 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 IL37Q9NZH6 218 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 CRNNQ9UBG3 495 aaPredicted RBP11.45□□□□□ -0.58
MSH6-204ENST00000445503 KNL1Q8NG31 2342 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 UNCXA6NJT0 531 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 ADAMTS4O75173 837 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 KCNK5O95279 499 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 TSPAN19P0C672 248 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 HOXB6P17509 224 aaKnown RBP11.45□□□□□ -0.58
MSH6-204ENST00000445503 ETV3P41162 512 aa11.45□□□□□ -0.58
MSH6-204ENST00000445503 MANFP55145 182 aaKnown RBP11.45□□□□□ -0.58
MSH6-204ENST00000445503 SLC35A2P78381 396 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms