RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SLCO1B3Q9NPD5 702 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 FGFR1OP2Q9NVK5 253 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 PSD3Q9NYI0 1048 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 PDP2Q9P2J9 529 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 HAO1Q9UJM8 370 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 SLC12A4Q9UP95 1085 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 TRIM33Q9UPN9 1127 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 PCDHGA4Q9Y5G9 962 aa9.67□□□□□ -0.86
CD44-207ENST00000425428 GOLGA8QA0A0J9YX86 632 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 GOLGA8OA6NCC3 632 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TMEM150CB9EJG8 249 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 GOLGA8NF8WBI6 632 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 PPP6CO00743 305 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 UBFD1O14562 309 aaKnown RBP9.66□□□□□ -0.86
CD44-207ENST00000425428 DIAPH2O60879 1101 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 OR2B3O76000 313 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 PDYNP01213 254 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 SERPINA6P08185 405 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 EPORP19235 508 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 CCR10P46092 362 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 ARSFP54793 590 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 RAB15P59190 212 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 CYP4F2P78329 520 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TUBB3Q13509 450 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 E2F2Q14209 437 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 IL11RAQ14626 422 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 NR6A1Q15406 480 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 RSPO4Q2I0M5 234 aaPredicted RBP9.66□□□□□ -0.86
CD44-207ENST00000425428 YOD1Q5VVQ6 348 aaPredicted RBP9.66□□□□□ -0.86
CD44-207ENST00000425428 FCRL6Q6DN72 434 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TLDC1Q6P9B6 456 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 DHRS13Q6UX07 377 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TMPRSS12Q86WS5 348 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 FAM9CQ8IZT9 166 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 CSNK1A1LQ8N752 337 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 ANKS4BQ8N8V4 417 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 RGMAQ96B86 450 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TUBGCP3Q96CW5 907 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 SLC41A2Q96JW4 573 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 KCNA7Q96RP8 456 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 SORT1Q99523 831 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 NDC1Q9BTX1 674 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TWSG1Q9GZX9 223 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 EPN3Q9H201 632 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 NPHS2Q9NP85 383 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TXLNGQ9NUQ3 528 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 PNPOQ9NVS9 261 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 TMEM9Q9P0T7 183 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 SEMA5BQ9P283 1151 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 VPS29Q9UBQ0 182 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 RAPGEFL1Q9UHV5 662 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 SH2B3Q9UQQ2 575 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 USH1CQ9Y6N9 552 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 SPACA6W5XKT8 324 aa9.66□□□□□ -0.86
CD44-207ENST00000425428 IGKV1-8A0A0C4DH67 115 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 SPAARA0A1B0GVQ0 90 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 EFCAB7A8K855 629 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 H0YGG7 62 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 GUCY1B2O75343 617 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 CSO75390 466 aaKnown RBP9.65□□□□□ -0.86
CD44-207ENST00000425428 LINC00032P0C843 101 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 MSL3P1P0C860 447 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 DDX5P17844 614 aaKnown RBP9.65□□□□□ -0.86
CD44-207ENST00000425428 SERPINB3P29508 390 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 BCL6P41182 706 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 ARF3P61204 181 aaPredicted RBP9.65□□□□□ -0.86
CD44-207ENST00000425428 INSM1Q01101 510 aaPredicted RBP9.65□□□□□ -0.86
CD44-207ENST00000425428 ACSM2AQ08AH3 577 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 HERC3Q15034 1050 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 RPS6KA2Q15349 733 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 AP5B1Q2VPB7 878 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 SPIN4Q56A73 249 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 WASHC2DQ5SRD0 308 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 HES3Q5TGS1 186 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 ACSM2BQ68CK6 577 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 ARHGAP22Q7Z5H3 698 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 PPP1R3BQ86XI6 285 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 PLD3Q8IV08 490 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 SLITRK4Q8IW52 837 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.65□□□□□ -0.86
CD44-207ENST00000425428 LRRC34Q8IZ02 419 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 RCBTB1Q8NDN9 531 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 METTL2AQ96IZ6 378 aaKnown RBP9.65□□□□□ -0.86
CD44-207ENST00000425428 ZPBPQ9BS86 351 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 NUF2Q9BZD4 464 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 REXO4Q9GZR2 422 aaKnown RBP9.65□□□□□ -0.86
CD44-207ENST00000425428 FGF21Q9NSA1 209 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 PPT2Q9UMR5 302 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 CDC14AQ9UNH5 594 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 SRPK3Q9UPE1 567 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 DNAJC15Q9Y5T4 150 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 MYO15AQ9UKN7 3530 aa9.65□□□□□ -0.86
CD44-207ENST00000425428 CCDC187A0A096LP49 1063 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 A0A0G2JND7 137 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 SERTM1A2A2V5 107 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 PIP5K1BO14986 540 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 POLR1CO15160 346 aaPredicted RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 SEC22BO75396 215 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 RSL1D1O76021 490 aaKnown RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 KCNK5O95279 499 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms