RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 HCN2Q9UL51 889 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 AKAP12Q02952 1782 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 BCL9O00512 1426 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 LDB2O43679 373 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 MT-CO2P00403 227 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 H1F0P07305 194 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FHP07954 510 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 F8A1P23610 371 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 ROR2Q01974 943 aaKnown RBP6.67□□□□□ -1.34
SCN1A-204ENST00000423058 IRF5Q13568 498 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 NOMO1Q15155 1222 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 CHRFAM7AQ494W8 412 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SLC44A1Q8WWI5 657 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 UNC93B1Q9H1C4 597 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PLEKHA3Q9HB20 300 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 NGBQ9NPG2 151 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 SNTG1Q9NSN8 517 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 EURLQ9NYK6 297 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 TVP23BQ9NYZ1 205 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 KLHL13Q9P2N7 655 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 FAM198AQ9UFP1 575 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 PCDHB14Q9Y5E9 798 aa6.67□□□□□ -1.34
SCN1A-204ENST00000423058 A6NLC8 198 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 BLOC1S5-TXNDC5H3BN57 136 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MFSD11O43934 449 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ACRP10323 421 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GLDCP23378 1020 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GNRHRP30968 328 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ASTE1Q2TB18 679 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ITPRIPL2Q3MIP1 535 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ALYREFQ86V81 257 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 STOML3Q8TAV4 291 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ADAMTS18Q8TE60 1221 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DQX1Q8TE96 717 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 HOXB13Q92826 284 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 COPS4Q9BT78 406 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MAGEE1Q9HCI5 957 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ABRACLQ9P1F3 81 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 FTSJ1Q9UET6 329 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 KLHL33A6NCF5 533 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 EFCAB9A8MZ26 197 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SOX1O00570 391 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ALOX15BO15296 676 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 B4GALT5O43286 388 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DIRAS3O95661 229 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 CD3GP09693 182 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 RAP2AP10114 183 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MMP8P22894 467 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 CAMK2DQ13557 499 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SEMA3AQ14563 771 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ADGRA1Q86SQ6 560 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 OR4E2Q8NGC2 313 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SHKBP1Q8TBC3 707 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 CITED4Q96RK1 184 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MECRQ9BV79 373 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 POLR2J2Q9GZM3 115 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 C8orf33Q9H7E9 229 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 FZD10Q9ULW2 581 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SDK1Q7Z5N4 2213 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 NPC1O15118 1278 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 CPNE6O95741 557 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MPP1Q00013 466 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 FGL2Q14314 439 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DPY19L3Q6ZPD9 716 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DCUN1D3Q8IWE4 304 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 NLGN2Q8NFZ4 835 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 COQ8AQ8NI60 647 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 PSMG2Q969U7 264 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 HSPA12BQ96MM6 686 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GAL3ST1Q99999 423 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SLC22A4Q9H015 551 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MOV10Q9HCE1 1003 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 FBRSL1Q9HCM7 1045 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TM9SF3Q9HD45 589 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 PPP4R1LQ9P1A2 415 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 PDE10AQ9Y233 779 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 NOP16Q9Y3C1 178 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF451Q9Y4E5 1061 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TELO2Q9Y4R8 837 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TIMM22Q9Y584 194 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 SNX10Q9Y5X0 201 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 C2orf71A6NGG8 1288 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 GABRDO14764 452 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 KLK1P06870 262 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 KCNC3Q14003 757 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DCDC5Q6ZRR9 648 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 CLIP4Q8N3C7 705 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 MMABQ96EY8 250 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TMEM41AQ96HV5 264 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TFB2MQ9H5Q4 396 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 FBRSQ9HAH7 460 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TGFB1P01137 390 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 IFNA5P01569 189 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 PABPC4LP0CB38 370 aaKnown RBP6.66□□□□□ -1.34
SCN1A-204ENST00000423058 HERVK_113P63132 956 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 PRKCZQ05513 592 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 DMWDQ09019 674 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 TUBA3CQ13748 450 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 HERC3Q15034 1050 aa6.66□□□□□ -1.34
SCN1A-204ENST00000423058 NTRK3Q16288 839 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms