RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 OR2A5Q96R48 311 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 SIKE1Q9BRV8 207 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 ZNF768Q9H5H4 540 aaKnown RBP17.28■□□□□ 0.36
SDC1-203ENST00000403076 DMRT3Q9NQL9 472 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 RIC8BQ9NVN3 520 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 IRAK4Q9NWZ3 460 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 SLC12A4Q9UP95 1085 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 PLCL2Q9UPR0 1127 aa17.28■□□□□ 0.36
SDC1-203ENST00000403076 LOC105369274A0A096LPK9 316 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 LOC102723532A0A0G2JNH3 316 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 GOLGA8QA0A0J9YX86 632 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 ATP6AP2A0A1C7CYW4 349 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 GOLGA8OA6NCC3 632 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 GOLGA8NF8WBI6 632 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 H0YGG7 62 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 FOXE1O00358 373 aaPredicted RBP17.27■□□□□ 0.36
SDC1-203ENST00000403076 NDUFS4O43181 175 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 RGS14O43566 566 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 CLEC3AO75596 197 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 ATP6AP2O75787 350 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 TGFB1P01137 390 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 ANKRD34CP0C6C1 535 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 HSD3B1P14060 373 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 HSD3B2P26439 372 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 ARFIP2P53365 341 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 INHBCP55103 352 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 VSX2P58304 361 aaPredicted RBP17.27■□□□□ 0.36
SDC1-203ENST00000403076 ARF3P61204 181 aaPredicted RBP17.27■□□□□ 0.36
SDC1-203ENST00000403076 RGS1Q08116 209 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 CSTF3Q12996 717 aaKnown RBP17.27■□□□□ 0.36
SDC1-203ENST00000403076 TRA2AQ13595 282 aaKnown RBP eCLIP17.27■□□□□ 0.36
SDC1-203ENST00000403076 KCNAB1Q14722 419 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 SPDYAQ5MJ70 313 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 NXNQ6DKJ4 435 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 FRMPD2BQ6IN97 320 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 MAVSQ7Z434 540 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 SPATA21Q7Z572 469 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 SLITRK4Q8IW52 837 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 OR4N4Q8N0Y3 316 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 ZNF655Q8N720 491 aaPredicted RBP17.27■□□□□ 0.36
SDC1-203ENST00000403076 TUBGCP3Q96CW5 907 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 CMTM7Q96FZ5 175 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 SLC41A2Q96JW4 573 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 TMEM74Q96NL1 305 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 MEAF6Q9HAF1 191 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 NMRK1Q9NWW6 199 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 KLHL14Q9P2G3 628 aa17.27■□□□□ 0.36
SDC1-203ENST00000403076 PCNX2A6NKB5 2137 aa17.27■□□□□ 0.35
SDC1-203ENST00000403076 SPAARA0A1B0GVQ0 90 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 ZNF195O14628 629 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SLC35G6P0C7Q6 338 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CDK4P11802 303 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 ALOX15P16050 662 aaPredicted RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 PTX3P26022 381 aaPredicted RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 EPHA3P29320 983 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CSTF2P33240 577 aaKnown RBP eCLIP17.26■□□□□ 0.35
SDC1-203ENST00000403076 SIM1P81133 766 aaPredicted RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 HMGCS1Q01581 520 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 NR6A1Q15406 480 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SLC9B1Q4ZJI4 515 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 EPGNQ6UW88 154 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 ACAD11Q709F0 780 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CHSY3Q70JA7 882 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 TRIM46Q7Z4K8 759 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 VN1R5Q7Z5H4 357 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 D2HGDHQ8N465 521 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CAMKVQ8NCB2 501 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SEC16BQ96JE7 1060 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 C3orf30Q96M34 536 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 RILPQ96NA2 401 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SERPINI1Q99574 410 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 MACROD1Q9BQ69 325 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 TMEM120AQ9BXJ8 343 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 NLNQ9BYT8 704 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CHRNA10Q9GZZ6 450 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 OR51B5Q9H339 312 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 WDR55Q9H6Y2 383 aaPredicted RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 BRF2Q9HAW0 419 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 TOR4AQ9NXH8 423 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CDV3Q9UKY7 258 aaKnown RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 APOBEC2Q9Y235 224 aaKnown RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 GVINP1Q7Z2Y8 2422 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SERTM1A2A2V5 107 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SDHDO14521 159 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SLC30A4O14863 429 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SRPX2O60687 465 aaPredicted RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 FAM107AO95990 144 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 IDH3AP50213 366 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 INSM1Q01101 510 aaPredicted RBP17.26■□□□□ 0.35
SDC1-203ENST00000403076 GALNTL6Q49A17 601 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 DHRS13Q6UX07 377 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 RNF165Q6ZSG1 346 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 VN1R4Q7Z5H5 301 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 B3GNT8Q7Z7M8 397 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 SLCO6A1Q86UG4 719 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CREB3L4Q8TEY5 395 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 CENPKQ9BS16 269 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 MS4A8Q9BY19 250 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 ACPTQ9BZG2 426 aa17.26■□□□□ 0.35
SDC1-203ENST00000403076 FANCEQ9HB96 536 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms