RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 A0A1B0GVM2 712 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 TMEM202A6NGA9 273 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 ITGALP20701 1170 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 CD9P21926 228 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 S100A5P33763 92 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 STK19P49842 368 aaPredicted RBP20.24■□□□□ 0.83
CTCF-202ENST00000401394 HNRNPFP52597 415 aaKnown RBP20.24■□□□□ 0.83
CTCF-202ENST00000401394 MXD1Q05195 221 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 SERPINA11Q86U17 422 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 B3GNT7Q8NFL0 401 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 TRMT61AQ96FX7 289 aaKnown RBP20.24■□□□□ 0.83
CTCF-202ENST00000401394 NUAK2Q9H093 628 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 MMP28Q9H239 520 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 SP140LQ9H930 580 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 GPATCH2Q9NW75 528 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 SH3BP4Q9P0V3 963 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 CLCA1A8K7I4 914 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 GABRR3A8MPY1 467 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 H3BQ06 376 aaPredicted RBP20.23■□□□□ 0.83
CTCF-202ENST00000401394 CDK1P06493 297 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 CCND3P30281 292 aaPredicted RBP20.23■□□□□ 0.83
CTCF-202ENST00000401394 CRATP43155 626 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 SLC11A1P49279 550 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 ITGA1P56199 1179 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 PPIGQ13427 754 aaKnown RBP eCLIP20.23■□□□□ 0.832e-6■■□□□ 14.2
CTCF-202ENST00000401394 CLEC2DQ9UHP7 191 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 TBC1D24Q9ULP9 559 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 HAT1O14929 419 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 MAGEA11P43364 429 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 DAB2P98082 770 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 PLD1Q13393 1074 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 TSTA3Q13630 321 aaPredicted RBP20.23■□□□□ 0.83
CTCF-202ENST00000401394 CNPPD1Q9BV87 410 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 SPASTQ9UBP0 616 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 PLXNA3P51805 1871 aa20.23■□□□□ 0.83
CTCF-202ENST00000401394 RPLP0P05388 317 aaKnown RBP20.22■□□□□ 0.83
CTCF-202ENST00000401394 MC1RQ01726 317 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 SPIBQ01892 262 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 ATAD3CQ5T2N8 411 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 FRG2Q64ET8 278 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 OR10G2Q8NGC3 310 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 FRG2BQ96QU4 278 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 TIGARQ9NQ88 270 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 SUV39H1O43463 412 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 GPX2P18283 190 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 OR1D2P34982 312 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 CTSOP43234 321 aaPredicted RBP20.22■□□□□ 0.83
CTCF-202ENST00000401394 GPR17Q13304 367 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 LRRC26Q2I0M4 334 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 C5orf22Q49AR2 442 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 ADGRF1Q5T601 910 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 SPATA17Q96L03 361 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 PITX2Q99697 317 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 ANKRD34BA5PLL1 514 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 E7EQ34 232 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 GPX5O75715 221 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 OR2B6P58173 313 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 CAP1Q01518 475 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 ELP6Q0PNE2 266 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 BAK1Q16611 211 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 ZNF181Q2M3W8 571 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 PAQR6Q6TCH4 344 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 TPGS1Q6ZTW0 290 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 ABI3BPQ7Z7G0 1075 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 SLC44A2Q8IWA5 706 aaPredicted RBP20.22■□□□□ 0.83
CTCF-202ENST00000401394 NXPE1Q8N323 547 aa20.22■□□□□ 0.83
CTCF-202ENST00000401394 LOC110117498-PIK3R3F6TDL0 507 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 TRBC1P01850 177 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 GGT2P36268 569 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 COL9A2Q14055 689 aaPredicted RBP20.21■□□□□ 0.83
CTCF-202ENST00000401394 THOC7Q6I9Y2 204 aaKnown RBP20.21■□□□□ 0.83
CTCF-202ENST00000401394 MMP21Q8N119 569 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 AMER2Q8N7J2 671 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 MED8Q96G25 268 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 CCNB1IP1Q9NPC3 277 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 SOX14O95416 240 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 SSTR4P31391 388 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 CDKN3Q16667 212 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 ZNF385BQ569K4 471 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 HECTD3Q5T447 861 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 PNCKQ6P2M8 343 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 SLC24A5Q71RS6 500 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 BBS7Q8IWZ6 715 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 LGI4Q8N135 537 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 C1orf52Q8N6N3 182 aaKnown RBP20.21■□□□□ 0.83
CTCF-202ENST00000401394 GPR151Q8TDV0 419 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 TESCQ96BS2 214 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 TCF25Q9BQ70 676 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 BARHL1Q9BZE3 327 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 RPS6KA6Q9UK32 745 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 TMPRSS11EQ9UL52 423 aa20.21■□□□□ 0.83
CTCF-202ENST00000401394 OR2AG2A6NM03 316 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 UGT2B15P54855 530 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 ABRQ12979 859 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 SLAMF1Q13291 335 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 SSX1Q16384 188 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 TTLL9Q3SXZ7 439 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 FUT10Q6P4F1 479 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 CERS6Q6ZMG9 384 aa20.2■□□□□ 0.82
CTCF-202ENST00000401394 LACC1Q8IV20 430 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms