RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NKAIN2Q5VXU1 208 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 METTL21CQ5VZV1 264 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 FAM92BQ6ZTR7 304 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 FNDC5Q8NAU1 212 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 WDR48Q8TAF3 677 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 WDR20Q8TBZ3 569 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 CMTM7Q96FZ5 175 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 LRRC37BQ96QE4 947 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 HBEGFQ99075 208 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 CDC6Q99741 560 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 EBF4Q9BQW3 602 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 IRAK4Q9NWZ3 460 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.62□□□□□ -0.23
SKA1-202ENST00000398452 VPS29Q9UBQ0 182 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 ZFP69BQ9UJL9 534 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 EIF3LQ9Y262 564 aaKnown RBP13.62□□□□□ -0.23
SKA1-202ENST00000398452 TSC22D4Q9Y3Q8 395 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 PCDH15Q96QU1 1955 aa13.62□□□□□ -0.23
SKA1-202ENST00000398452 EPG5Q9HCE0 2579 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 CHD8Q9HCK8 2581 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 ADAMTS9Q9P2N4 1935 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 MAP1BP46821 2468 aaKnown RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 A0A0J9YVX5 310 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 SERTM1A2A2V5 107 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 URADA6NGE7 173 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 E9PBE3 544 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 EBAG9O00559 213 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 SDHDO14521 159 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 ZNF195O14628 629 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 HAT1O14929 419 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 TNFSF14O43557 240 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 KLHL41O60662 606 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 PRAMEF4O60810 478 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 CLEC3AO75596 197 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 CPNE6O95741 557 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 SLC35G6P0C7Q6 338 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 PCSK2P16519 638 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 AHRP35869 848 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 MLLT3P42568 568 aaPredicted RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 SCTRP47872 440 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 LIMK1P53667 647 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 RPS13P62277 151 aaKnown RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 CYP4F2P78329 520 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 IRX1P78414 480 aaPredicted RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 CYP4F3Q08477 520 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 ACSM2AQ08AH3 577 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 AP5B1Q2VPB7 878 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 LSM12Q3MHD2 195 aaKnown RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 SNAP47Q5SQN1 464 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 PRAMEF9Q5VWM5 478 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 ACSM2BQ68CK6 577 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 ZNF425Q6IV72 752 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 WDR74Q6RFH5 385 aaPredicted RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 USP53Q70EK8 1073 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 MAVSQ7Z434 540 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 TRIM46Q7Z4K8 759 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 SPATA19Q7Z5L4 167 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 PAQR7Q86WK9 346 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 PLD3Q8IV08 490 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 NAXDQ8IW45 347 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 FAM9CQ8IZT9 166 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 C19orf47Q8N9M1 422 aaKnown RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 MFSD9Q8NBP5 474 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 CAMKVQ8NCB2 501 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 BAHD1Q8TBE0 780 aaPredicted RBP13.61□□□□□ -0.23
SKA1-202ENST00000398452 TCTN2Q96GX1 697 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 MAP3K3Q99759 626 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 ZFYVE21Q9BQ24 234 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 KLHL25Q9H0H3 589 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 RHBGQ9H310 441 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 LRRN3Q9H3W5 708 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 AKTIPQ9H8T0 292 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 KCNK13Q9HB14 408 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 LRTM1Q9HBL6 345 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 PDE7BQ9NP56 450 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 C1orf109Q9NX04 203 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 KLHL20Q9Y2M5 609 aa13.61□□□□□ -0.23
SKA1-202ENST00000398452 ARHGAP10A1A4S6 786 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 OR2A25A4D2G3 310 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 SLC9B1P1A6NJY1 282 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 MAGEB17A8MXT2 336 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 TXNDC9O14530 226 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 B4GAT1O43505 415 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 ZBTB11O95625 1053 aaPredicted RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 JUNP05412 331 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 SERPINA6P08185 405 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 PVRP15151 417 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 STXBP1P61764 594 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 RPL38P63173 70 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 YBX1P67809 324 aaKnown RBP13.6□□□□□ -0.23
SKA1-202ENST00000398452 HMGCS1Q01581 520 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 RELAQ04206 551 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 SMU1Q2TAY7 513 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 SPIN4Q56A73 249 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 XKR7Q5GH72 579 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 PERM1Q5SV97 790 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 TMEM71Q6P5X7 295 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 DBX2Q6ZNG2 339 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 PAGE2Q7Z2X7 111 aa13.6□□□□□ -0.23
SKA1-202ENST00000398452 ASPGQ86U10 573 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms