RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TMEM26Q6ZUK4 368 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 THOC6Q86W42 341 aaKnown RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ZNF420Q8TAQ5 688 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 C12orf43Q96C57 262 aaKnown RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 DCUN1D5Q9BTE7 237 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 GIN1Q9NXP7 522 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 RPS6KA6Q9UK32 745 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 MAGED1Q9Y5V3 778 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 TRBV5-3A0A0A0MS03 114 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 GRXCR1A8MXD5 290 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 KPNA3O00505 521 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 NOBOXO60393 691 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 CCNDBP1O95273 360 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 GSTM1P09488 218 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 HNRNPA1P09651 372 aaKnown RBP eCLIP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ELFN1P0C7U0 828 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ACPPP15309 386 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 NR4A2P43354 598 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 IL1RL1Q01638 556 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 TSTA3Q13630 321 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 RAB39AQ14964 217 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 CES5AQ6NT32 575 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 AGTRAPQ6RW13 159 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ZDHHC21Q8IVQ6 265 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ELMOD2Q8IZ81 293 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 NETO1Q8TDF5 533 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ITPKCQ96DU7 683 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 MAGED4Q96JG8 741 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 REXO4Q9GZR2 422 aaKnown RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 IGFLR1Q9H665 355 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 FAM118AQ9NWS6 357 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 USE1Q9NZ43 259 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 GPRC5BQ9NZH0 403 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 IL36AQ9UHA7 158 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 TMPRSS11EQ9UL52 423 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ERVK-11Q9UQG0 969 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 IRAK3Q9Y616 596 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 SCN8AQ9UQD0 1980 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 CLIC1O00299 241 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ELK4P28324 431 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 PBLDP30039 288 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 RPS3AP61247 264 aaKnown RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 PHC1P78364 1004 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 PMS2P3Q13401 168 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 TUBA3EQ6PEY2 450 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 CALHM3Q86XJ0 350 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 ZNF366Q8N895 744 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 PHOSPHO2Q8TCD6 241 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 BTN2A2Q8WVV5 523 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 AP2M1Q96CW1 435 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 MTERF1Q99551 399 aaKnown RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 TUBA1CQ9BQE3 449 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 KLHL25Q9H0H3 589 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 SERHL2Q9H4I8 314 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 CARS2Q9HA77 564 aaKnown RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 SGK2Q9HBY8 427 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 FAM120CQ9NX05 1096 aaKnown RBP9.32□□□□□ -0.92
COL6A3-204ENST00000392003 NEUROG3Q9Y4Z2 214 aa9.32□□□□□ -0.92
COL6A3-204ENST00000392003 OBSL1O75147 1896 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 ZNF106Q9H2Y7 1883 aaKnown RBP9.31□□□□□ -0.92
COL6A3-204ENST00000392003 TRIM64A6NGJ6 449 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 MYO1GB0I1T2 1018 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 MEN1O00255 615 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 SLCO2B1O94956 709 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 FKBP9O95302 570 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 CA3P07451 260 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 TCF3P15923 654 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 TIMP2P16035 220 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 IL1RNP18510 177 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 ASMTP46597 345 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 P2RX3P56373 397 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 PFN3P60673 137 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 CD83Q01151 205 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 UBE3AQ05086 875 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 NKG7Q16617 165 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 ZNF805Q5CZA5 627 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 ZNF648Q5T619 568 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-204ENST00000392003 ADIPOR2Q86V24 386 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 OTUB2Q96DC9 234 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 CCM2Q9BSQ5 444 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 SERHLQ9NQF3 203 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 SIRT5Q9NXA8 310 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 CPNE7Q9UBL6 633 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 EBF1Q9UH73 591 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 PPT2Q9UMR5 302 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 U3KQV3 271 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 SERTM1A2A2V5 107 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 MGAT4DA6NG13 374 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 MAGEB17A8MXT2 336 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 AREL1O15033 823 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 ENGP17813 658 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 IL32P24001 234 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 SHMT2P34897 504 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 DCTP40126 519 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 DGKGP49619 791 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 PPP1R8Q12972 351 aaKnown RBP9.31□□□□□ -0.92
COL6A3-204ENST00000392003 KCNAB2Q13303 367 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 DOC2AQ14183 400 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 SPRED2Q7Z698 418 aa9.31□□□□□ -0.92
COL6A3-204ENST00000392003 HORMAD1Q86X24 394 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms