RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ACAT2Q9BWD1 397 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 SRMSQ9H3Y6 488 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 SCHIP1Q9P0W5 487 aaPredicted RBP17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 TAAR2Q9P1P5 351 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 APOBEC3BQ9UH17 382 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 AP4B1Q9Y6B7 739 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 COL6A3P12111 3177 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 FAM221BA6H8Z2 402 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 ANKDD1BA6NHY2 528 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 TLR4O00206 839 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 BCKDHAP12694 445 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 JUNDP17535 347 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 AMD1P17707 334 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 KIAA0040Q15053 153 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 PLCL1Q15111 1095 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 TLR1Q15399 786 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 DPY19L1Q2PZI1 675 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 IYDQ6PHW0 289 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 FAM129CQ86XR2 697 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 NRROSQ86YC3 692 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 SDR16C5Q8N3Y7 309 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 C2orf73Q8N5S3 287 aaPredicted RBP17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 LINC01555Q8NAE3 123 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 PROKR1Q8TCW9 393 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 FCRL1Q96LA6 429 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 ZNF597Q96LX8 424 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 HSPA12BQ96MM6 686 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 OSBPL11Q9BXB4 747 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 MIR1-1HGQ9H1L0 117 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 RHBGQ9H310 441 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 EPB41L1Q9H4G0 881 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 MRPS30Q9NP92 439 aaKnown RBP17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 DMRT3Q9NQL9 472 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 PADI4Q9UM07 663 aa17.48■□□□□ 0.39
CCDC88C-203ENST00000389856 A0A1W2PPV9 198 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 FKBP9O95302 570 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 TNFAIP8O95379 198 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 ZCCHC18P0CG32 403 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 ZNF26P17031 533 aaPredicted RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 PAX7P23759 505 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SH3BGRP55822 239 aaPredicted RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 CLDN8P56748 225 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 REEP5Q00765 189 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 RBBP5Q15291 538 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 NOXRED1Q6NXP6 359 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 ERMP1Q7Z2K6 904 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 GKN2Q86XP6 184 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 OR4K1Q8NGD4 311 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 DNAJB8Q8NHS0 232 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 CCL4L1Q8NHW4 92 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 TMEM125Q96AQ2 219 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SLCO4A1Q96BD0 722 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 APOLD1Q96LR9 279 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 DUSP15Q9H1R2 295 aaPredicted RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 XKR8Q9H6D3 395 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 TMEM184CQ9NVA4 438 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 CMTM6Q9NX76 183 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SIRT5Q9NXA8 310 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 ZNF624Q9P2J8 865 aaPredicted RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SNX7Q9UNH6 387 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SH2B3Q9UQQ2 575 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 AP3M1Q9Y2T2 418 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 PCDHGA2Q9Y5H1 932 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SMIM31A0A1B0GVY4 71 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 A0A1W2PR77 199 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 MAGEB17A8MXT2 336 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 CSF2P04141 144 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 NME1P15531 152 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 PRPS1L1P21108 318 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 PSMA4P25789 261 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 ZFP36L2P47974 494 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 RPS13P62277 151 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 KIR2DS3Q14952 304 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 ADRM1Q16186 407 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 FXNQ16595 210 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SLC9B2Q86UD5 537 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 PROSER1Q86XN7 944 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 APIPQ96GX9 242 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 TSC22D3Q99576 134 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 ZNF696Q9H7X3 374 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 TM9SF3Q9HD45 589 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SPASTQ9UBP0 616 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 INVSQ9Y283 1065 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 SNX13Q9Y5W8 968 aa17.47■□□□□ 0.39
CCDC88C-203ENST00000389856 FANCMQ8IYD8 2048 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 DHRS12A0PJE2 317 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 ANKRD28O15084 1053 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 SEMA3DO95025 777 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 CHRM5P08912 532 aaPredicted RBP17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 HTR1EP28566 365 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 RPL3P39023 403 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 SLC19A1P41440 591 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 C21orf59P57076 290 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 MAP7Q14244 749 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 TEAD4Q15561 434 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 SF1Q15637 639 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 LIN52Q52LA3 116 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 MSANTD1Q6ZTZ1 278 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 ADCK2Q7Z695 626 aa17.46■□□□□ 0.39
CCDC88C-203ENST00000389856 SYT12Q8IV01 421 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms