RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 COMMD1Q8N668 190 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 DAZAP1Q96EP5 407 aaKnown RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 HSPE1-MOB4S4R3N1 261 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 INO80Q9ULG1 1556 aaPredicted RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 C2orf92A0A1B0GVN3 265 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 A0A1W2PRB8 838 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 CBX4O00257 560 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 SLC18A1P54219 525 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 REEP3Q6NUK4 255 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 AKR7LQ8NHP1 331 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 ST7LQ8TDW4 575 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 ZNF641Q96N77 438 aaPredicted RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 SLC6A7Q99884 636 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 CISHQ9NSE2 258 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 TNFSF13BQ9Y275 285 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 MYPNQ86TC9 1320 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 SHANK2Q9UPX8 1470 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 GPR89AB7ZAQ6 455 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 PRKAB2O43741 272 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 GPR89BP0CG08 455 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 RPS19P39019 145 aaKnown RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 GCNT1Q02742 428 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 GRAPQ13588 217 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 HECTD2Q5U5R9 776 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 ADGRF2Q8IZF7 708 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 LRRN4CLQ8ND94 238 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 PAQR8Q8TEZ7 354 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 SEZ6LQ9BYH1 1024 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 APMAPQ9HDC9 416 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 CHRNA9Q9UGM1 479 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 NDOR1Q9UHB4 597 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 EXO1Q9UQ84 846 aaKnown RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 NCOA3Q9Y6Q9 1424 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 PLA2R1Q13018 1463 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 NUPL2O15504 423 aaKnown RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 TRAPPC2P0DI81 140 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 TRAPPC2BP0DI82 140 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 PTPN2P17706 415 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 HNRNPA3P51991 378 aaKnown RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 NKX2-5P52952 324 aaPredicted RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 RAP2BP61225 183 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 SF3A2Q15428 464 aaKnown RBP8.51□□□□□ -1.05
LIG3-202ENST00000378526 GJB7Q6PEY0 223 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 FAM185AQ8N0U4 392 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 ZNF527Q8NB42 609 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 NFKBIDQ8NI38 313 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 LGALS12Q96DT0 336 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 CGRRF1Q99675 332 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 TAS2R16Q9NYV7 291 aa8.51□□□□□ -1.05
LIG3-202ENST00000378526 PER1O15534 1290 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 M6PRP20645 277 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SULT1A2P50226 295 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 GBE1Q04446 702 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SLC39A12Q504Y0 691 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 TBC1D10CQ8IV04 446 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 CHFRQ96EP1 664 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 KCNC2Q96PR1 638 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 CACNG6Q9BXT2 260 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 OR8D2Q9GZM6 311 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 PTGES2Q9H7Z7 377 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SGK2Q9HBY8 427 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 AIG1Q9NVV5 245 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 YTHDF2Q9Y5A9 579 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 CLCA3PQ9Y6N3 262 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 BBOX1O75936 387 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 MBL2P11226 248 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 EPHX2P34913 555 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 GIPRP48546 466 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 FMO1Q01740 532 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 HABP2Q14520 560 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 MYLK3Q32MK0 819 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ZMAT1Q5H9K5 638 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 OR52H1Q8NGJ2 320 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 GRIN3AQ8TCU5 1115 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ELP4Q96EB1 424 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 OCSTAMPQ9BR26 566 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SLC25A31Q9H0C2 315 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 TMEM181Q9P2C4 612 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 HRH3Q9Y5N1 445 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 CAMSAP1Q5T5Y3 1602 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 DNMBPQ6XZF7 1577 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ZNF587BE7ETH6 402 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 hCG_2039718K7EN88 272 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 PCDH17O14917 1159 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 PRKACGP22612 351 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 FRKP42685 505 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 PROKR2Q8NFJ6 384 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 ZBED6CLQ96FA7 236 aaPredicted RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 MMP19Q99542 508 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 AARSD1Q9BTE6 412 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 KLHL9Q9P2J3 617 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 SCML2Q9UQR0 700 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 MAP4K5Q9Y4K4 846 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 PCDHB1Q9Y5F3 818 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 CPSF1Q10570 1443 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 A0A1W2PPW3 197 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 DENRO43583 198 aaKnown RBP8.5□□□□□ -1.05
LIG3-202ENST00000378526 LCP2Q13094 533 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 TAF9Q16594 264 aa8.5□□□□□ -1.05
LIG3-202ENST00000378526 PAN2Q504Q3 1202 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms