RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CROCCP3Q8IVE0 287 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 NDUFAF2Q8N183 169 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 FBXL16Q8N461 479 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 KLHDC1Q8N7A1 406 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 NOA1Q8NC60 698 aaKnown RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 OR52N5Q8NH56 324 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 SMAP2Q8WU79 429 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 PYCR2Q96C36 320 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 PGM2Q96G03 612 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF486Q96H40 463 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 HNRNPABQ99729 332 aaKnown RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 LRRC61Q9BV99 259 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 UTP14AQ9BVJ6 771 aaKnown RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 FUT8Q9BYC5 575 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 ZMYND12Q9H0C1 365 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 SHARPINQ9H0F6 387 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 TRPV4Q9HBA0 871 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 PHPT1Q9NRX4 125 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 FGF21Q9NSA1 209 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 FAM207AQ9NSI2 230 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 P4HTMQ9NXG6 502 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 NUDT4Q9NZJ9 180 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 TNNQ9UQP3 1299 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 PPP2R2CQ9Y2T4 447 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 MOB4Q9Y3A3 225 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 CROCCQ5TZA2 2017 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 C2orf81A6NN90 581 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 PRSS46E5RG02 174 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 SLC30A4O14863 429 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF263O14978 683 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 CTDSPLO15194 276 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 FLRT2O43155 660 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 NME6O75414 186 aaPredicted RBP1.84□□□□□ -2.11
VPS13A-206ENST00000376646 GOSR1O95249 250 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 IGHV4-31P0DP07 118 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 VDRP11473 427 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 EPORP19235 508 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 MAZP56270 477 aaKnown RBP1.84□□□□□ -2.11
VPS13A-206ENST00000376646 SLC8A3P57103 927 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 ST8SIA6P61647 398 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 PPP2R5CQ13362 524 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 RCN2Q14257 317 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 C2CD6Q53TS8 623 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 OR4A47Q6IF82 309 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 FAM166AQ6J272 317 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 LRRTM1Q86UE6 522 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF519Q8TB69 540 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 DYRK2Q92630 601 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 PTP4A1Q93096 173 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 SGF29Q96ES7 293 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 SOSTQ9BQB4 213 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 RIMS4Q9H426 269 aaPredicted RBP1.84□□□□□ -2.11
VPS13A-206ENST00000376646 TUFT1Q9NNX1 390 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 SLC7A10Q9NS82 523 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 PKD2L2Q9NZM6 624 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 CNIH4Q9P003 139 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 VPS18Q9P253 973 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 GMEB2Q9UKD1 530 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 PPP1R3CQ9UQK1 317 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 LIPT1Q9Y234 373 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 CSAG2Q9Y5P2 127 aa1.84□□□□□ -2.11
VPS13A-206ENST00000376646 SLC33A1O00400 549 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 NXPH2O95156 264 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 ITIH1P19827 911 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 LHCGRP22888 699 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 CCND3P30281 292 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 CDX1P47902 265 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 LEPRP48357 1165 aaKnown RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 ALDH3A2P51648 485 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 SULT2A1Q06520 285 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 TRAP1Q12931 704 aaKnown RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 TAF13Q15543 124 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 RBBP7Q16576 425 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 SMU1Q2TAY7 513 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 HLA-BQ31612 363 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 IQCCQ4KMZ1 466 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 TAF1BQ53T94 588 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 SLC35D3Q5M8T2 416 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 SPOUT1Q5T280 376 aaKnown RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 C20orf194Q5TEA3 1177 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 LYSMD4Q5XG99 296 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 CTR9Q6PD62 1173 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 PODNL1Q6PEZ8 512 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 PRSS55Q6UWB4 352 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 IL17RELQ6ZVW7 336 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 ANKRD33Q7Z3H0 272 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 PIGWQ7Z7B1 504 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 C4orf19Q8IY42 314 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 KIRREL3Q8IZU9 778 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 Q8N377 158 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 CARNMT1Q8N4J0 409 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 CCDC63Q8NA47 563 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 MSANTD4Q8NCY6 345 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 OR7G3Q8NG95 312 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 OR5AP2Q8NGF4 316 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 SEPT1Q8WYJ6 367 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 P2RX5Q93086 422 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 TEKT1Q969V4 418 aa1.84□□□□□ -2.12
VPS13A-206ENST00000376646 TSACCQ96A04 125 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-206ENST00000376646 AK8Q96MA6 479 aa1.84□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms