RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 CCDC197Q8NCU1 140 aa10.62□□□□□ -0.71
RTN3-204ENST00000354497 SREK1Q8WXA9 508 aaKnown RBP10.62□□□□□ -0.71
RTN3-204ENST00000354497 SLC22A18Q96BI1 424 aa10.62□□□□□ -0.71
RTN3-204ENST00000354497 ARL8AQ96BM9 186 aa10.62□□□□□ -0.71
RTN3-204ENST00000354497 DNAJC1Q96KC8 554 aaKnown RBP10.62□□□□□ -0.71
RTN3-204ENST00000354497 NR1H4Q96RI1 486 aaPredicted RBP10.62□□□□□ -0.71
RTN3-204ENST00000354497 PACSIN1Q9BY11 444 aa10.62□□□□□ -0.71
RTN3-204ENST00000354497 CCDC134Q9H6E4 229 aa10.62□□□□□ -0.71
RTN3-204ENST00000354497 CCM2LQ9NUG4 571 aaPredicted RBP10.62□□□□□ -0.71
RTN3-204ENST00000354497 SAR1BQ9Y6B6 198 aa10.62□□□□□ -0.71
RTN3-204ENST00000354497 PRSS21Q9Y6M0 314 aa10.62□□□□□ -0.71
RTN3-204ENST00000354497 IGLV3-16A0A075B6K0 115 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 FITM1A5D6W6 292 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 FOXO6A8MYZ6 492 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 EIF3FO00303 357 aaPredicted RBP10.61□□□□□ -0.71
RTN3-204ENST00000354497 LSM1O15116 133 aaKnown RBP10.61□□□□□ -0.71
RTN3-204ENST00000354497 CST8O60676 142 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 ZWINTO95229 277 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 S1PR4O95977 384 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 FTH1P02794 183 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 CD9P21926 228 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 EEF1DP29692 281 aaKnown RBP10.61□□□□□ -0.71
RTN3-204ENST00000354497 GSTT1P30711 240 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 NR2C2P49116 596 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 TRIM14Q14142 442 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 TFDP2Q14188 446 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 PCOLCEQ15113 449 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 RCN1Q15293 331 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 PARP6Q2NL67 630 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 GALNTL6Q49A17 601 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 MFSD7Q6UXD7 560 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 PIGWQ7Z7B1 504 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 DOLPP1Q86YN1 238 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 CNGA4Q8IV77 575 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 BEST3Q8N1M1 668 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 GHDCQ8N2G8 530 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 SCAIQ8N9R8 606 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 LINC01555Q8NAE3 123 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 FBF1Q8TES7 1133 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 PHF10Q8WUB8 498 aaKnown RBP10.61□□□□□ -0.71
RTN3-204ENST00000354497 VAT1Q99536 393 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 FOXC2Q99958 501 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 TNFRSF10DQ9UBN6 386 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 RNF14Q9UBS8 474 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 SLC39A10Q9ULF5 831 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 EFR3BQ9Y2G0 817 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 R3HDM2Q9Y2K5 976 aaKnown RBP10.61□□□□□ -0.71
RTN3-204ENST00000354497 ABCA2Q9BZC7 2435 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 NCOA6Q14686 2063 aaPredicted RBP10.61□□□□□ -0.71
RTN3-204ENST00000354497 ANKRD12Q6UB98 2062 aa10.61□□□□□ -0.71
RTN3-204ENST00000354497 FAM221AA4D161 298 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 E9PLN8 166 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 PRPF4O43172 522 aaKnown RBP eCLIP10.6□□□□□ -0.713e-8■□□□□ 10.6
RTN3-204ENST00000354497 ASNA1O43681 348 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 CTSVO60911 334 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 ANXA9O76027 345 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 SEC24DO94855 1032 aaPredicted RBP10.6□□□□□ -0.71
RTN3-204ENST00000354497 AP2A2O94973 939 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 ANXA5P08758 320 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 ICAM2P13598 275 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 DRD4P21917 467 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 OCRLQ01968 901 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 OC90Q02509 493 aaPredicted RBP10.6□□□□□ -0.71
RTN3-204ENST00000354497 FOXD4Q12950 439 aaPredicted RBP10.6□□□□□ -0.71
RTN3-204ENST00000354497 OR1C1Q15619 314 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 CEBPEQ15744 281 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 MUM1Q2TAK8 710 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 CES4AQ5XG92 561 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 ITPRIPL1Q6GPH6 555 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 Q71RC1 249 aaPredicted RBP10.6□□□□□ -0.71
RTN3-204ENST00000354497 VSIG1Q86XK7 387 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 ACBD4Q8NC06 268 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 FAM98AQ8NCA5 519 aaKnown RBP10.6□□□□□ -0.71
RTN3-204ENST00000354497 LRRC45Q96CN5 670 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 SIGLEC12Q96PQ1 595 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 MIPEPQ99797 713 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 TREX2Q9BQ50 279 aaPredicted RBP10.6□□□□□ -0.71
RTN3-204ENST00000354497 VKORC1Q9BQB6 163 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 TUBB6Q9BUF5 446 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 ZNF700Q9H0M5 742 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 GBA3Q9H227 469 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 C10orf88Q9H8K7 445 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 TMBIM4Q9HC24 238 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 C14orf105Q9NVL8 296 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 TRHDEQ9UKU6 1024 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 CARD8Q9Y2G2 431 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 NAV3Q8IVL0 2385 aa10.6□□□□□ -0.71
RTN3-204ENST00000354497 LOC105369274A0A096LPK9 316 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 IGHV3-20A0A0C4DH32 117 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 LOC102723532A0A0G2JNH3 316 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 SLC5A10A0PJK1 596 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 QSOX1O00391 747 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 SRPX2O60687 465 aaPredicted RBP10.59□□□□□ -0.71
RTN3-204ENST00000354497 CD46P15529 392 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 PSMB5P28074 263 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 PLOD1Q02809 727 aaPredicted RBP10.59□□□□□ -0.71
RTN3-204ENST00000354497 FOLH1Q04609 750 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 TUBA3CQ13748 450 aa10.59□□□□□ -0.71
RTN3-204ENST00000354497 FASTKQ14296 549 aaKnown RBP10.59□□□□□ -0.71
RTN3-204ENST00000354497 SPARCL1Q14515 664 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms