RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TMEM86AQ8N2M4 240 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CARNMT1Q8N4J0 409 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CAMKK1Q8N5S9 505 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 GALNT6Q8NCL4 622 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 DENND6BQ8NEG7 585 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 WDR36Q8NI36 951 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 BTN2A2Q8WVV5 523 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 KCNJ9Q92806 393 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 MYEOVQ96EZ4 313 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 HHIPQ96QV1 700 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ZYG11BQ9C0D3 744 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 LSM2Q9Y333 95 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 HCN4Q9Y3Q4 1203 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 PLXNA4Q9HCM2 1894 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 BRWD3Q6RI45 1802 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 LTBP3Q9NS15 1303 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 TRAV19A0A0A6YYK7 116 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 IQCMA0A1B0GVH7 501 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 A0A1W2PQH9 124 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 STX7O15400 261 aaKnown RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 DPM1O60762 260 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 CLEC2LP0C7M8 214 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 SDC1P18827 310 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 CD9P21926 228 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 AQP1P29972 269 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 WEE1P30291 646 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 MC4RP32245 332 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 PBX3P40426 434 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 RGRP47804 291 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 RORCP51449 518 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 TEKQ02763 1124 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 MXD1Q05195 221 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 IL10RBQ08334 325 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 SERINC3Q13530 473 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 DMC1Q14565 340 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 QPRTQ15274 297 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 TIGD5Q53EQ6 642 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 GLT6D1Q7Z4J2 308 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 KRT73Q86Y46 540 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 CPA6Q8N4T0 437 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 DTX3Q8N9I9 347 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 OR10G2Q8NGC3 310 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 C9orf43Q8TAL5 461 aaPredicted RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 USP7Q93009 1102 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 MARVELD3Q96A59 401 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 PKMYT1Q99640 499 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 GTPBP2Q9BX10 602 aaKnown RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 MCOLN1Q9GZU1 580 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 BPIFA1Q9NP55 256 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 DIABLOQ9NR28 239 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 B3GNT2Q9NY97 397 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 ABI2Q9NYB9 513 aaPredicted RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 GLTPQ9NZD2 209 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 CLEC2DQ9UHP7 191 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 DUSP12Q9UNI6 340 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 POLHQ9Y253 713 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 ARIH1Q9Y4X5 557 aaPredicted RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 PCDHGB3Q9Y5G1 929 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 DNMT3AQ9Y6K1 912 aaPredicted RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 TEX51A0A1B0GUA7 166 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 ZNF670-ZNF695F2Z2N8 137 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 TNFRSF11BO00300 401 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 GCM2O75603 506 aaPredicted RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 SLC25A27O95847 323 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 GLUD1P00367 558 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 PRLP01236 227 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 SCG5P05408 212 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 FAM157BP0CG42 384 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 CKMT1AP12532 417 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 ZNF250P15622 560 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 DPEP1P16444 411 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 GPX2P18283 190 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 PSMA3P25788 255 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 ZXDBP98169 803 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 PCDH1Q08174 1060 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 MGAT3Q09327 533 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 CSTF3Q12996 717 aaKnown RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 CCNJQ5T5M9 372 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 XKRXQ6PP77 449 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 MBOAT1Q6ZNC8 495 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 RNF165Q6ZSG1 346 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 RASAL3Q86YV0 1011 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 C9orf62Q8N4C0 152 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 SLC43A3Q8NBI5 491 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 OR9Q2Q8NGE9 314 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 OR4C15Q8NGM1 316 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 OR52J3Q8NH60 311 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 LRRC20Q8TCA0 184 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 DNAJB3Q8WWF6 145 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 TESCQ96BS2 214 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 ULK4Q96C45 1275 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 B3GALT6Q96L58 329 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 C17orf62Q9BQA9 187 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 C12orf4Q9NQ89 552 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 MCUBQ9NWR8 336 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 NDUFAF4Q9P032 175 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 PLEKHB1Q9UF11 243 aaPredicted RBP6.55□□□□□ -1.36
VPS39-202ENST00000348544 NUP50Q9UKX7 468 aa6.55□□□□□ -1.36
VPS39-202ENST00000348544 OGDHLQ9ULD0 1010 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms