RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZNF71Q9NQZ8 489 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 PTBP2Q9UKA9 531 aaKnown RBP15.03■□□□□ -0
CLN3-201ENST00000333496 ACOT9Q9Y305 439 aa15.03■□□□□ -0
CLN3-201ENST00000333496 DYRK1BQ9Y463 629 aa15.03■□□□□ -0
CLN3-201ENST00000333496 KCNE2Q9Y6J6 123 aa15.03■□□□□ -0
CLN3-201ENST00000333496 B8ZZF3 427 aa15.03■□□□□ -0
CLN3-201ENST00000333496 FFAR3O14843 346 aa15.03■□□□□ -0
CLN3-201ENST00000333496 POLR3GO15318 223 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 GPR42O15529 346 aa15.03■□□□□ -0
CLN3-201ENST00000333496 OR1F1O43749 312 aa15.03■□□□□ -0
CLN3-201ENST00000333496 ZGLP1P0C6A0 271 aa15.03■□□□□ -0
CLN3-201ENST00000333496 NR1D1P20393 614 aa15.03■□□□□ -0
CLN3-201ENST00000333496 FBLP22087 321 aaKnown RBP15.03■□□□□ -0
CLN3-201ENST00000333496 HSPA7P48741 367 aa15.03■□□□□ -0
CLN3-201ENST00000333496 DSG2Q14126 1118 aa15.03■□□□□ -0
CLN3-201ENST00000333496 SULT1C3Q6IMI6 304 aa15.03■□□□□ -0
CLN3-201ENST00000333496 NXPE4Q6UWF7 544 aa15.03■□□□□ -0
CLN3-201ENST00000333496 MED25Q71SY5 747 aa15.03■□□□□ -0
CLN3-201ENST00000333496 ASPGQ86U10 573 aa15.03■□□□□ -0
CLN3-201ENST00000333496 LAPTM4BQ86VI4 370 aa15.03■□□□□ -0
CLN3-201ENST00000333496 ANKRD53Q8N9V6 530 aa15.03■□□□□ -0
CLN3-201ENST00000333496 CAMKVQ8NCB2 501 aa15.03■□□□□ -0
CLN3-201ENST00000333496 C9orf43Q8TAL5 461 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 STAG3L4Q8TBR4 150 aa15.03■□□□□ -0
CLN3-201ENST00000333496 AENQ8WTP8 325 aaKnown RBP15.03■□□□□ -0
CLN3-201ENST00000333496 SLC13A3Q8WWT9 602 aa15.03■□□□□ -0
CLN3-201ENST00000333496 PAFAH2Q99487 392 aa15.03■□□□□ -0
CLN3-201ENST00000333496 PELI2Q9HAT8 420 aa15.03■□□□□ -0
CLN3-201ENST00000333496 NMRAL1Q9HBL8 299 aa15.03■□□□□ -0
CLN3-201ENST00000333496 ACSS2Q9NR19 701 aa15.03■□□□□ -0
CLN3-201ENST00000333496 ZNF282Q9UDV7 671 aaPredicted RBP15.03■□□□□ -0
CLN3-201ENST00000333496 RNF112Q9ULX5 631 aa15.03■□□□□ -0
CLN3-201ENST00000333496 CDC14AQ9UNH5 594 aa15.03■□□□□ -0
CLN3-201ENST00000333496 ASB1Q9Y576 335 aa15.03■□□□□ -0
CLN3-201ENST00000333496 MASP2O00187 686 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 PRAMEF4O60810 478 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 PDGFAP04085 211 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 INHBAP08476 426 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 MMP11P24347 488 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 VARSP26640 1264 aaKnown RBP15.02□□□□□ -0.01
CLN3-201ENST00000333496 SCTRP47872 440 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 CCL11P51671 97 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 REEP5Q00765 189 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 KLC1Q07866 573 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 NDUFA9Q16795 377 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 SYT16Q17RD7 645 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 PRAMEF9Q5VWM5 478 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 SLCO4C1Q6ZQN7 724 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 TCAIMQ8N3R3 496 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 TMEM102Q8N9M5 508 aaPredicted RBP15.02□□□□□ -0.01
CLN3-201ENST00000333496 OR9A4Q8NGU2 314 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 DCAKDQ8WVC6 231 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.02□□□□□ -0.015e-8■■■■■ 65.3
CLN3-201ENST00000333496 EXT2Q93063 718 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 IP6K3Q96PC2 410 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 MESP1Q9BRJ9 268 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 TXLNGYQ9BZA5 131 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 P4HTMQ9NXG6 502 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 WWOXQ9NZC7 414 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 CD274Q9NZQ7 290 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 NXT1Q9UKK6 140 aaKnown RBP15.02□□□□□ -0.01
CLN3-201ENST00000333496 TP53TG5Q9Y2B4 290 aa15.02□□□□□ -0.01
CLN3-201ENST00000333496 A0A087WUV0 522 aaPredicted RBP15.01□□□□□ -0.01
CLN3-201ENST00000333496 A0A087X1B8 175 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 A0A096LPK6 155 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 POC1B-GALNT4F8VUJ3 575 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 MKRN2OSH3BPM6 223 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 SOCS6O14544 535 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 KERAO60938 352 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 CEACAM4O75871 244 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 NSA2O95478 260 aaKnown RBP15.01□□□□□ -0.01
CLN3-201ENST00000333496 MTHFD2P13995 350 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 IL1RNP18510 177 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 GCAP28676 217 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 TYK2P29597 1187 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 MAGEA12P43365 314 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 SERPINB8P50452 374 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 MAT1AQ00266 395 aaKnown RBP15.01□□□□□ -0.01
CLN3-201ENST00000333496 OCA2Q04671 838 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 CDC16Q13042 620 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 TCTN3Q6NUS6 607 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 CCDC91Q7Z6B0 441 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 PTRH1Q86Y79 214 aaKnown RBP15.01□□□□□ -0.01
CLN3-201ENST00000333496 PDSS2Q86YH6 399 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 PRSS58Q8IYP2 241 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 PLD6Q8N2A8 252 aaKnown RBP15.01□□□□□ -0.01
CLN3-201ENST00000333496 ZCCHC10Q8TBK6 192 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 ISL2Q96A47 359 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 MIEF2Q96C03 454 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 GPR78Q96P69 363 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 MLXIPLQ9NP71 852 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 TRPC4Q9UBN4 977 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 ZFP69BQ9UJL9 534 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 MAP4K5Q9Y4K4 846 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 HS3ST3B1Q9Y662 390 aa15.01□□□□□ -0.01
CLN3-201ENST00000333496 H0YIG0 161 aa15□□□□□ -0.01
CLN3-201ENST00000333496 H3BQF6 201 aa15□□□□□ -0.01
CLN3-201ENST00000333496 UBXN8O00124 270 aa15□□□□□ -0.01
CLN3-201ENST00000333496 NDUFS4O43181 175 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms