RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 TRIM60Q495X7 471 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 TNFAIP8L2Q6P589 184 aaPredicted RBP12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 TRAF7Q6Q0C0 670 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 ADCK2Q7Z695 626 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 HMGN2P46Q86SG4 172 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 ASB11Q8WXH4 323 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 CNDP2Q96KP4 475 aaKnown RBP12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 SLC35A5Q9BS91 424 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 OR51E2Q9H255 320 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 CTPS2Q9NRF8 586 aa12.44□□□□□ -0.42
HMGCS1-201ENST00000325110 MYOFQ9NZM1 2061 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ARHGEF33A8MVX0 844 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 CCL16O15467 120 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 TPST2O60704 377 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ALDH1A1P00352 501 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 PCMT1P22061 227 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 SPINT3P49223 89 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 IFITM3Q01628 133 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ZXDCQ2QGD7 858 aaPredicted RBP12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ZNF404Q494X3 552 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ARSIQ5FYB1 569 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ARMCX4Q5H9R4 360 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 LRIF1Q5T3J3 769 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 TMEM220Q6QAJ8 160 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ZNF852Q6ZMS4 543 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 TSPYL5Q86VY4 417 aaPredicted RBP12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 TMEM25Q86YD3 366 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 CFAP206Q8IYR0 622 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 MYDGFQ969H8 173 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 CEP295NLQ96MC4 621 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 RDH14Q9HBH5 336 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 RLIMQ9NVW2 624 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 EHD3Q9NZN3 535 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 PCDHB11Q9Y5F2 797 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 PTPRDP23468 1912 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 SMIM30A4D0T7 59 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ETHE1O95571 254 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 HLA-FP30511 346 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 HNMTP50135 292 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 GSTM4Q03013 218 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 GAB1Q13480 694 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 EXOC3L2Q2M3D2 409 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 SPANXN2Q5MJ10 180 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 KDM4DQ6B0I6 523 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 DNAJB8Q8NHS0 232 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 HUS1BQ8NHY5 278 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 WDR36Q8NI36 951 aaKnown RBP12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 CIDECQ96AQ7 238 aaPredicted RBP12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 PPCDCQ96CD2 204 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ITM2BQ9Y287 266 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 TMED5Q9Y3A6 229 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 DYRK1BQ9Y463 629 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ANKRD36A6QL64 1941 aa12.43□□□□□ -0.42
HMGCS1-201ENST00000325110 ANKDD1BA6NHY2 528 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 FAM227AF5H4B4 570 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 APOA1P02647 267 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 CBSLP0DN79 551 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 ITGAMP11215 1152 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 CBSP35520 551 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 FEN1P39748 380 aaKnown RBP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 CTSCP53634 463 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 POLR2LP62875 67 aaKnown RBP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 ST3GAL4Q11206 333 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 PPIGQ13427 754 aaKnown RBP eCLIP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 COX20Q5RI15 118 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 OTOP2Q7RTS6 562 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 ENTHD1Q8IYW4 607 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 ELMOD1Q8N336 334 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 OR6Q1Q8NGQ2 317 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 GPBP1L1Q9HC44 474 aaPredicted RBP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 NECTIN3Q9NQS3 549 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 INIPQ9NRY2 104 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 FAM120CQ9NX05 1096 aaKnown RBP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 PRKAB1Q9Y478 270 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 NLRC5Q86WI3 1866 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 TRAV19A0A0A6YYK7 116 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 A0A0G2JN53 185 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 YY2O15391 372 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 TLL1O43897 1013 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 MED26O95402 600 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 POP4O95707 220 aaKnown RBP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 C1SP09871 688 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 PDHA2P29803 388 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 RAB15P59190 212 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 MXD1Q05195 221 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 SLBPQ14493 270 aaKnown RBP eCLIP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 HIST2H2ACQ16777 129 aaPredicted RBP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 INAVAQ3KP66 663 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 PRSS36Q5K4E3 855 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 TPRG1LQ5T0D9 272 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 RSBN1Q5VWQ0 802 aaPredicted RBP12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 PLEKHG7Q6ZR37 379 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 PTCHD4Q6ZW05 846 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 HSD11B1LQ7Z5J1 315 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 SERPINA11Q86U17 422 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 CALHM3Q86XJ0 350 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 RNF130Q86XS8 419 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 PTOV1Q86YD1 416 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 OVCA2Q8WZ82 227 aa12.42□□□□□ -0.42
HMGCS1-201ENST00000325110 SLC38A4Q969I6 547 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms