RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	GADD45G	O95257	159 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	IL3	P08700	152 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	TSPAN19	P0C672	248 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	SLC35G6	P0C7Q6	338 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	CBSL	P0DN79	551 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	LHCGR	P22888	699 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	CBS	P35520	551 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	CLDN2	P57739	230 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	CDK6	Q00534	326 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	TRAF3	Q13114	568 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	SLC9A5	Q14940	896 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	PDCD4	Q53EL6	469 aa	Known RBP	11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	IFI44L	Q53G44	452 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	PLEKHS1	Q5SXH7	462 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	BHLHB9	Q6PI77	547 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF551	Q7Z340	670 aa	Predicted RBP	11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	NPAS3	Q8IXF0	933 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	CADM2	Q8N3J6	435 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	TRAM1L1	Q8N609	369 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	GPR150	Q8NGU9	434 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	MTERF3	Q96E29	417 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	CHCHD6	Q9BRQ6	235 aa		11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	CDV3	Q9UKY7	258 aa	Known RBP	11.43	□□□□□ -0.58
DDR1-223	ENST00000324771	EP300	Q09472	2414 aa	Predicted RBP	11.43	□□□□□ -0.58
DDR1-223	ENST00000324771		A8MUA0	341 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CDC123	O75794	336 aa	Predicted RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	GSR	P00390	522 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	MRPS15	P82914	257 aa	Known RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CCSMST1	Q4G0I0	132 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF776	Q68DI1	518 aa	Predicted RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF730	Q6ZMV8	503 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	OR4N5	Q8IXE1	308 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	DTWD1	Q8N5C7	304 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	BIRC8	Q96P09	236 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	NCOR1	O75376	2440 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	SIPA1L1	O43166	1804 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CACNA1E	Q15878	2313 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	LIN7A	O14910	233 aa	Predicted RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CYP17A1	P05093	508 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	MTHFD2	P13995	350 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CCR2	P41597	374 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	HK3	P52790	923 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	MXD1	Q05195	221 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	KCNAB2	Q13303	367 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	GPR68	Q15743	365 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	OR2T5	Q6IEZ7	315 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	PLEKHM3	Q6ZWE6	761 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	ZFAND4	Q86XD8	727 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	METTL27	Q8N6F8	245 aa	Predicted RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	OR2T29	Q8NH02	315 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	DNAJA3	Q96EY1	480 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CMTM7	Q96FZ5	175 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CLN6	Q9NWW5	311 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	TVP23B	Q9NYZ1	205 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	UTS2R	Q9UKP6	389 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	MAPRE3	Q9UPY8	281 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	MRPS7	Q9Y2R9	242 aa	Known RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	ALPK2	Q86TB3	2170 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	TRBC2	A0A5B9	178 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	DYRK3	O43781	588 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CH25H	O95992	272 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	ETFA	P13804	333 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CDK9	P50750	372 aa	Known RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	PTPN5	P54829	565 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	ABHD18	Q0P651	414 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	TARDBP	Q13148	414 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	SNAPC1	Q16533	368 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	LGI4	Q8N135	537 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	NEIL2	Q969S2	332 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	OTUB2	Q96DC9	234 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	TRMT2B	Q96GJ1	504 aa	Known RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	STOX2	Q9P2F5	926 aa	Predicted RBP	11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	DMTF1	Q9Y222	760 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	PCDHB14	Q9Y5E9	798 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	STON1	Q9Y6Q2	735 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	PCNT	O95613	3336 aa		11.42	□□□□□ -0.58
DDR1-223	ENST00000324771	CPSF4L	A6NMK7	179 aa	Known RBP	11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	PSMD11	O00231	422 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	ITPKB	P27987	946 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	RPL4	P36578	427 aa	Known RBP	11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	GSTM5	P46439	218 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	PNLIPRP1	P54315	467 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	ARSF	P54793	590 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	CDKL1	Q00532	357 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	PTS	Q03393	145 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	SELPLG	Q14242	412 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	INA	Q16352	499 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	DCST1	Q5T197	706 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	NUDT13	Q86X67	352 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	CAMKK1	Q8N5S9	505 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	TERB1	Q8NA31	727 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	ZNF740	Q8NDX6	193 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	OR7G3	Q8NG95	312 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	WDR36	Q8NI36	951 aa	Known RBP	11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	PROKR1	Q8TCW9	393 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	ZBED6CL	Q96FA7	236 aa	Predicted RBP	11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	BTBD1	Q9H0C5	482 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	TUBB1	Q9H4B7	451 aa		11.41	□□□□□ -0.58
DDR1-223	ENST00000324771	RPF2	Q9H7B2	306 aa	Known RBP	11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms