RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 GIPC3Q8TF64 312 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 KCNK13Q9HB14 408 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 DAPK2Q9UIK4 370 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 ANKRD36CQ5JPF3 1778 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 ARHGEF33A8MVX0 844 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 INMTO95050 263 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 SLC6A11P48066 632 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 CCT3P49368 545 aaKnown RBP13.07□□□□□ -0.32
RFFL-201ENST00000315249 ARL10Q8N8L6 244 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 RFKQ969G6 155 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 MPP4Q96JB8 637 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 CEP295NLQ96MC4 621 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 BLOC1S5-TXNDC5H3BN57 136 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 EIF1AYO14602 144 aaKnown RBP13.07□□□□□ -0.32
RFFL-201ENST00000315249 CAPN5O15484 640 aaPredicted RBP13.07□□□□□ -0.32
RFFL-201ENST00000315249 ADAMTS4O75173 837 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 CER1O95813 267 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 ATP1A4Q13733 1029 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 FAM78AQ5JUQ0 283 aa13.07□□□□□ -0.32
RFFL-201ENST00000315249 PRAMEF26H0Y7S4 382 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 SCO2O43819 266 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 PAPSS2O95340 614 aaPredicted RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 NR0B2Q15466 257 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 PGAM4Q8N0Y7 254 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 GLIS1Q8NBF1 620 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 RBM15BQ8NDT2 890 aaKnown RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 C3orf58Q8NDZ4 430 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 PROKR2Q8NFJ6 384 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 PEX11GQ96HA9 241 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 KCNA7Q96RP8 456 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 WDR77Q9BQA1 342 aaPredicted RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 HSD3B7Q9H2F3 369 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 CDH22Q9UJ99 828 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 SPIN1Q9Y657 262 aaPredicted RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 ADAM12O43184 909 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 WNT7BP56706 349 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 SP140Q13342 867 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 ADGRE1Q14246 886 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 CAND1Q86VP6 1230 aaKnown RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 UMODL1-AS1Q8N2C9 162 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 CLCC1Q96S66 551 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 MRM3Q9HC36 420 aaKnown RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 TEX264Q9Y6I9 313 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 FAM25EA8MYX2 175 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 PROZP22891 400 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 KBTBD2Q8IY47 623 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 TSGA13Q96PP4 275 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 PKP4Q99569 1192 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 RNPEPL1Q9HAU8 725 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 OXSMQ9NWU1 459 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 TVP23BQ9NYZ1 205 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 DHRS7Q9Y394 339 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 ITM2AO43736 263 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 ELF3P78545 371 aaPredicted RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 NSDHLQ15738 373 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 CDKN3Q16667 212 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 UBQLNLQ8IYU4 475 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 NFKBIDQ8NI38 313 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 TRAPPC9Q96Q05 1148 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 DNMT3BQ9UBC3 853 aaKnown RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 ZFR2Q9UPR6 939 aaKnown RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 ATG2BQ96BY7 2078 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 ARID1BQ8NFD5 2236 aaPredicted RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 DNAJA2O60884 412 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 CREB1P16220 341 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 PFKLP17858 780 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 NIPAL1Q6NVV3 410 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 SLC30A8Q8IWU4 369 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 C2CD4AQ8NCU7 369 aaPredicted RBP13.06□□□□□ -0.32
RFFL-201ENST00000315249 MYLIPQ8WY64 445 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 EPYCQ99645 322 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 ECM29Q5VYK3 1845 aa13.06□□□□□ -0.32
RFFL-201ENST00000315249 MANBAO00462 879 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 CD6P30203 668 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 GABRA3P34903 492 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 CAPGP40121 348 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 TBPL1P62380 186 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 ASTE1Q2TB18 679 aaPredicted RBP13.05□□□□□ -0.32
RFFL-201ENST00000315249 TANGO2Q6ICL3 276 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 BANPQ8N9N5 519 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 STAT5AP42229 794 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 XKP51811 444 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 DSC1Q08554 894 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 MSS51Q4VC12 460 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 TMEM198Q66K66 360 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 TMEM225Q6GV28 225 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 RABEPKQ7Z6M1 372 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 ACTL8Q9H568 366 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 ZDHHC2Q9UIJ5 367 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 SMCHD1A6NHR9 2005 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 TP53I11O14683 189 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 HCRTR2O43614 444 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 C6orf47O95873 294 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 IFNA6P05013 189 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 PROS1P07225 676 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 KCNC1P48547 511 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 SRYQ05066 204 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 MADCAM1Q13477 382 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 FLYWCH1Q4VC44 716 aa13.05□□□□□ -0.32
RFFL-201ENST00000315249 OR4K1Q8NGD4 311 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms