RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KIAA0319LQ8IZA0 1049 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 LILRB4Q8NHJ6 448 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 TERB2Q8NHR7 220 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 MALSU1Q96EH3 234 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 MFSD3Q96ES6 412 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ABCG8Q9H221 673 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 KCNH6Q9H252 994 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 NT5DC2Q9H857 520 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 ZNF232Q9UNY5 417 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 MAN2B2Q9Y2E5 1009 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 PCDHGB2Q9Y5G2 931 aa6.23□□□□□ -1.41
VPS35-201ENST00000299138 LTBP3Q9NS15 1303 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ZNF891A8MT65 544 aaPredicted RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 PIRO00625 290 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 HCN1O60741 890 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 UGT2B17O75795 530 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 UPK1BO75841 260 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 APOA2P02652 100 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 AHSGP02765 367 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TNFSF9P41273 254 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 NRIP1P48552 1158 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PITPNAQ00169 270 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SLC3A1Q07837 685 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 NBPF12Q5TAG4 269 aaPredicted RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 MEDAGQ5VYS4 303 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 HLA-DQA1Q5Y7H0 255 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SLC30A6Q6NXT4 461 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 IL27RAQ6UWB1 636 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 LIMS2Q7Z4I7 341 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TMED4Q7Z7H5 227 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SYT12Q8IV01 421 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SPARTQ8N0X7 666 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SLC2A14Q8TDB8 520 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 COL26A1Q96A83 441 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 CCDC3Q9BQI4 270 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PRDM8Q9NQV8 689 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 POLE4Q9NR33 117 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 INTS7Q9NVH2 962 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.22□□□□□ -1.411e-9■■■□□ 17.1
VPS35-201ENST00000299138 KLHL21Q9UJP4 597 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PCDHA9Q9Y5H5 950 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 A0A096LPI6 279 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 A0A0A6YYH2 397 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TUBAL3A6NHL2 446 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 A6NJ64 397 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 J3QRK9 145 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 NME4O00746 187 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 LATS1O95835 1130 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 HTR2AP28223 471 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 GNALP38405 381 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 DNASE1L1P49184 302 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ELAVL2Q12926 359 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 PMS2P3Q13401 168 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 GNA13Q14344 377 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PCBP2Q15366 365 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS35-201ENST00000299138 IGFN1Q86VF2 1251 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 RNF130Q86XS8 419 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 LSMEM2Q8N112 164 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 GPC2Q8N158 579 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PPTC7Q8NI37 304 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 FBXL8Q96CD0 374 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 GPR78Q96P69 363 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 DPCDQ9BVM2 203 aaPredicted RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 NLNQ9BYT8 704 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SPATC1LQ9H0A9 340 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ATP13A3Q9H7F0 1226 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 ELP3Q9H9T3 547 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TRAV6A0A075B6T7 132 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 INMTO95050 263 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PCSK6P29122 969 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 CMPK1P30085 196 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SLC15A1P46059 708 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 DSG2Q14126 1118 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 EIF2B1Q14232 305 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 ANKDD1AQ495B1 522 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 RFTN2Q52LD8 501 aaPredicted RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 HES5Q5TA89 166 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TMEM214Q6NUQ4 689 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 LHFPL3Q86UP9 236 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 KIF18BQ86Y91 864 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SPPL2CQ8IUH8 684 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SCUBE3Q8IX30 993 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 GDPD1Q8N9F7 314 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 TESCQ96BS2 214 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 SLC25A36Q96CQ1 311 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 MMP19Q99542 508 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 RHBGQ9H310 441 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 BCAS3Q9H6U6 928 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 AKTIPQ9H8T0 292 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PIH1D1Q9NWS0 290 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 SMPD4Q9NXE4 827 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 PPP1R14DQ9NXH3 145 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 IL20Q9NYY1 176 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 CDC14AQ9UNH5 594 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 NOP16Q9Y3C1 178 aaKnown RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 BTAF1O14981 1849 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 NPIPB8E9PQR5 432 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 BOLA2-SMG1P6H3BVE0 249 aa6.22□□□□□ -1.41
VPS35-201ENST00000299138 RGS9O75916 674 aaPredicted RBP6.22□□□□□ -1.41
VPS35-201ENST00000299138 UBE2UQ5VVX9 321 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms