RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SLC26A3P40879 764 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 RPS15AP62244 130 aaKnown RBP18.3■□□□□ 0.52
CLN3-260ENST00000637578 DSG2Q14126 1118 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 FAM53BQ14153 422 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 UAP1Q16222 522 aaPredicted RBP18.3■□□□□ 0.52
CLN3-260ENST00000637578 CAPN13Q6MZZ7 669 aaPredicted RBP18.3■□□□□ 0.52
CLN3-260ENST00000637578 VN1R4Q7Z5H5 301 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 ADCK2Q7Z695 626 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 C17orf64Q86WR6 236 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 HPS6Q86YV9 775 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 CEP97Q8IW35 865 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 NKAPQ8N5F7 415 aaKnown RBP18.3■□□□□ 0.52
CLN3-260ENST00000637578 ABHD11Q8NFV4 315 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 STT3BQ8TCJ2 826 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 SLC44A1Q8WWI5 657 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 COL26A1Q96A83 441 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 PAFAH2Q99487 392 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 TRIM54Q9BYV2 358 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 POPDC3Q9HBV1 291 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 SEMA3GQ9NS98 782 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 GPR83Q9NYM4 423 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 HS3ST3B1Q9Y662 390 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 EXOC1LA0A1B0GW35 172 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 ZGLP1P0C6A0 271 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 SPRP35270 261 aaPredicted RBP18.3■□□□□ 0.52
CLN3-260ENST00000637578 KCNC4Q03721 635 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 KIRREL2Q6UWL6 708 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 AMER3Q8N944 861 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 CLEC1AQ8NC01 280 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 OR4K1Q8NGD4 311 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 ATL1Q8WXF7 558 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 CAVIN3Q969G5 261 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 TM4SF19Q96DZ7 209 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 OR4K3Q96R72 315 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 GPR22Q99680 433 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 HAUS8Q9BT25 410 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 SARGQ9BW04 601 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 SOX17Q9H6I2 414 aaPredicted RBP18.3■□□□□ 0.52
CLN3-260ENST00000637578 A6NL46 340 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 POC1B-GALNT4F8VUJ3 575 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 FBLP22087 321 aaKnown RBP18.29■□□□□ 0.52
CLN3-260ENST00000637578 SNRPNP63162 240 aaKnown RBP18.29■□□□□ 0.52
CLN3-260ENST00000637578 FOXK1P85037 733 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 POU4F1Q01851 419 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 OCA2Q04671 838 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 KLC1Q07866 573 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 SHISA6Q6ZSJ9 500 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 GALNT16Q8N428 558 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 ANKRD49Q8WVL7 239 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 TGIF2Q9GZN2 237 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 DRC3Q9H069 523 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 CAB39LQ9H9S4 337 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 ATP13A2Q9NQ11 1180 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 C5AR2Q9P296 337 aa18.29■□□□□ 0.52
CLN3-260ENST00000637578 G3BP2Q9UN86 482 aaKnown RBP18.29■□□□□ 0.52
CLN3-260ENST00000637578 TNRC6AQ8NDV7 1962 aaKnown RBP18.28■□□□□ 0.52
CLN3-260ENST00000637578 CDC7O00311 574 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 PRPF4O43172 522 aaKnown RBP eCLIP18.28■□□□□ 0.52
CLN3-260ENST00000637578 INHBAP08476 426 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 HSD17B3P37058 310 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 CDKL1Q00532 357 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 BMPR2Q13873 1038 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 ZNF460Q14592 562 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 MYBPC3Q14896 1274 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 VWA2Q5GFL6 755 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 COLEC12Q5KU26 742 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 VWA5B1Q5TIE3 1220 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 MIEF2Q96C03 454 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 PYCR2Q96C36 320 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 CLMPQ9H6B4 373 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 ZNF552Q9H707 407 aaPredicted RBP18.28■□□□□ 0.52
CLN3-260ENST00000637578 FBXL4Q9UKA2 621 aa18.28■□□□□ 0.52
CLN3-260ENST00000637578 HMX2A2RU54 273 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 MASP2O00187 686 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 LCMT2O60294 686 aaKnown RBP18.27■□□□□ 0.52
CLN3-260ENST00000637578 CDH1P12830 882 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 MSH2P43246 934 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 AIMP2Q13155 320 aaKnown RBP18.27■□□□□ 0.52
CLN3-260ENST00000637578 USP10Q14694 798 aaKnown RBP18.27■□□□□ 0.52
CLN3-260ENST00000637578 NADK2Q4G0N4 442 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 ATG9BQ674R7 924 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 IGFL3Q6UXB1 125 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 LAPTM4BQ86VI4 370 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 OR11G2Q8NGC1 345 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 DCAKDQ8WVC6 231 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 MRPS2Q9Y399 296 aaKnown RBP18.27■□□□□ 0.52
CLN3-260ENST00000637578 MAP4K5Q9Y4K4 846 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 IKBKGQ9Y6K9 419 aa18.27■□□□□ 0.52
CLN3-260ENST00000637578 SPENQ96T58 3664 aaKnown RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 A0A0A6YYC8 382 aaPredicted RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 PABPN1LA6NDY0 278 aaKnown RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 I3L1I5 382 aaPredicted RBP18.26■□□□□ 0.51
CLN3-260ENST00000637578 KLHL41O60662 606 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 DPM1O60762 260 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 GUCA1CO95843 209 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 SHBGP04278 402 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 GCAP28676 217 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 BCL6P41182 706 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 NDUFA9Q16795 377 aa18.26■□□□□ 0.51
CLN3-260ENST00000637578 MROH9Q5TGP6 573 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms