RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 MR1Q95460 341 aa19.37■□□□□ 0.69
PTCD3-220ENST00000627371 KIAA1143Q96AT1 154 aaPredicted RBP19.37■□□□□ 0.69
PTCD3-220ENST00000627371 PHF21BQ96EK2 531 aa19.37■□□□□ 0.69
PTCD3-220ENST00000627371 WDR34Q96EX3 536 aa19.37■□□□□ 0.69
PTCD3-220ENST00000627371 AKIRIN1Q9H9L7 192 aaPredicted RBP19.37■□□□□ 0.69
PTCD3-220ENST00000627371 GEMIN8Q9NWZ8 242 aaKnown RBP19.37■□□□□ 0.69
PTCD3-220ENST00000627371 CROTQ9UKG9 612 aa19.37■□□□□ 0.69
PTCD3-220ENST00000627371 A0A1B0GX78 115 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 TERTO14746 1132 aaKnown RBP19.36■□□□□ 0.69
PTCD3-220ENST00000627371 DSCR3O14972 297 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 OR1F1O43749 312 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 PRAMEF4O60810 478 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 SIX3O95343 332 aaPredicted RBP19.36■□□□□ 0.69
PTCD3-220ENST00000627371 EPB42P16452 691 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 CXCR2P25025 360 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 CRHR1P34998 444 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 CCT5P48643 541 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 SLC18A2Q05940 514 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 PCDH1Q08174 1060 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 E2F2Q14209 437 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 SLBPQ14493 270 aaKnown RBP eCLIP19.36■□□□□ 0.69
PTCD3-220ENST00000627371 KRT71Q3SY84 523 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 C1orf189Q5VU69 101 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 GARNL3Q5VVW2 1013 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 PRAMEF9Q5VWM5 478 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 TTLL10Q6ZVT0 673 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 ASPGQ86U10 573 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 C4orf33Q8N1A6 199 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 ARHGEF39Q8N4T4 335 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 CAMKVQ8NCB2 501 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 CT55Q8WUE5 264 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 HNRNPLLQ8WVV9 542 aaKnown RBP19.36■□□□□ 0.69
PTCD3-220ENST00000627371 TM4SF19Q96DZ7 209 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 C10orf90Q96M02 699 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 ZIM3Q96PE6 472 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 EFHD1Q9BUP0 239 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 NLNQ9BYT8 704 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 CHST8Q9H2A9 424 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 GPN2Q9H9Y4 310 aaPredicted RBP19.36■□□□□ 0.69
PTCD3-220ENST00000627371 COPG2Q9UBF2 871 aa19.36■□□□□ 0.69
PTCD3-220ENST00000627371 LRRC14BA6NHZ5 514 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 A8MT66 165 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 C21orf140B9A014 251 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 E2F3O00716 465 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 COPEO14579 308 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 H2AFYO75367 372 aaKnown RBP19.35■□□□□ 0.69
PTCD3-220ENST00000627371 MED26O95402 600 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 TCN2P20062 427 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 TAC1P20366 129 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 AGXTP21549 392 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 EEF1DP29692 281 aaKnown RBP19.35■□□□□ 0.69
PTCD3-220ENST00000627371 AHRP35869 848 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 DLSTP36957 453 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 PIK3CGP48736 1102 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 TMPRSS3P57727 454 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 NFKB2Q00653 900 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 TBCCQ15814 346 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 MUM1Q2TAK8 710 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 XKR6Q5GH73 641 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 LCN10Q6JVE6 187 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 FAM199XQ6PEV8 388 aaPredicted RBP19.35■□□□□ 0.69
PTCD3-220ENST00000627371 TEX9Q8N6V9 391 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 PTCD3Q96EY7 689 aaKnown RBP19.35■□□□□ 0.69
PTCD3-220ENST00000627371 EFCAB11Q9BUY7 163 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 PITHD1Q9GZP4 211 aaPredicted RBP19.35■□□□□ 0.69
PTCD3-220ENST00000627371 MKS1Q9NXB0 559 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 ZFP69BQ9UJL9 534 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 EMCNQ9ULC0 261 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 ANGPTL3Q9Y5C1 460 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 DSPP15924 2871 aaKnown RBP19.35■□□□□ 0.69
PTCD3-220ENST00000627371 SCN3AQ9NY46 2000 aa19.35■□□□□ 0.69
PTCD3-220ENST00000627371 KATNA1O75449 491 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 STATHP02808 62 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 SLC35G6P0C7Q6 338 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 ALAS2P22557 587 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 CASP2P42575 452 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 DCDP81605 110 aaKnown RBP19.34■□□□□ 0.69
PTCD3-220ENST00000627371 IRF8Q02556 426 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 CHIT1Q13231 466 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 DNASE1L3Q13609 305 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 GTF2H2Q13888 395 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 COL9A2Q14055 689 aaPredicted RBP19.34■□□□□ 0.69
PTCD3-220ENST00000627371 DOC2AQ14183 400 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 GTF2H2CQ6P1K8 395 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 FAM198BQ6UWH4 519 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 GOLGA7Q7Z5G4 137 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 SRRM1Q8IYB3 904 aaKnown RBP19.34■□□□□ 0.69
PTCD3-220ENST00000627371 KRT78Q8N1N4 520 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 ANKRD53Q8N9V6 530 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 SLC13A3Q8WWT9 602 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 MVB12AQ96EY5 273 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 C17orf62Q9BQA9 187 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 FAM117AQ9C073 453 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 NT5DC2Q9H857 520 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 NDOR1Q9UHB4 597 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 KCND3Q9UK17 655 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 GRID1Q9ULK0 1009 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 PCDHGA6Q9Y5G7 932 aa19.34■□□□□ 0.69
PTCD3-220ENST00000627371 NDUFS4O43181 175 aa19.33■□□□□ 0.68
PTCD3-220ENST00000627371 EFSO43281 561 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms