RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 NME6O75414 186 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 NPM3O75607 178 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 IMPDH1P20839 514 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 PKLRP30613 574 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 RYKP34925 604 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 CLCN5P51795 746 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 FAM209BQ5JX69 171 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 NXNL2Q5VZ03 156 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ATG4CQ96DT6 458 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SYNPO2LQ9H987 977 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SDHAF2Q9NX18 166 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SAMD4AQ9UPU9 718 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 PTPRUQ92729 1446 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 DEPDC5O75140 1603 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 INSRRP14616 1297 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ALDH1B1P30837 517 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 DNAJA1P31689 397 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ANXA11P50995 505 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 PURAQ00577 322 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 CHAF1BQ13112 559 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GTF2H2Q13888 395 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GTF2H2CQ6P1K8 395 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 TNFAIP8L2Q6P589 184 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 FAM196AQ6ZSG2 479 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 LHFPL3Q86UP9 236 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ATP6V1C2Q8NEY4 427 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SNX33Q8WV41 574 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 TMEM80Q96HE8 168 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF512BQ96KM6 892 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GPR88Q9GZN0 384 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 C11orf54Q9H0W9 315 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MUC13Q9H3R2 512 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF334Q9HCZ1 680 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GPATCH2Q9NW75 528 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 PARPBPQ9NWS1 579 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 TEX10Q9NXF1 929 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 CACNG4Q9UBN1 327 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 INTS6Q9UL03 887 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 NME4O00746 187 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 DLGAP1O14490 977 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 KLF11O14901 512 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ITGA2P17301 1181 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 L1CAMP32004 1257 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 RORAP35398 523 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MNDAP41218 407 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MTAPQ13126 283 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF177Q13360 481 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 C3P1Q6ZMU1 363 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 C12orf45Q8N5I9 185 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 C14orf79Q96F83 325 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 INPP5KQ9BT40 448 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 OR2S2Q9NQN1 319 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MRTO4Q9UKD2 239 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GJD2Q9UKL4 321 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 RPS26P62854 115 aaKnown RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 ZACNQ401N2 412 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 CRY2Q49AN0 593 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 C9orf152Q5JTZ5 239 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 OR2L2Q8NH16 312 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 OR4L1Q8NH43 312 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 FDXACB1Q9BRP7 624 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 FAM126AQ9BYI3 521 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 ULBP1Q9BZM6 244 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 ACTL7AQ9Y615 435 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 ABHD14A-ACY1A0A1B0GW23 586 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 H0YAE9 185 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 AHSA1O95433 338 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 RHCEP18577 417 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 POLR2CP19387 275 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 NKX3-2P78367 333 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 SLC35F1Q5T1Q4 408 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 POMZP3Q6PJE2 187 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 MFSD2AQ8NA29 543 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 SIMC1Q8NDZ2 872 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 TREX2Q9BQ50 279 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 TUBG2Q9NRH3 451 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 CXXC1Q9P0U4 656 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 PTPN3P26045 913 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 MAGEA6P43360 314 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 RARRES1P49788 294 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 MANFP55145 182 aaKnown RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 AP3S2P59780 193 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 DUSP6Q16828 381 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 PAPD4Q6PIY7 484 aaKnown RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 TRAPPC5Q8IUR0 188 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 CHERPQ8IWX8 916 aaKnown RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 ENTHD1Q8IYW4 607 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 DHRS9Q9BPW9 319 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 CPNE5Q9HCH3 593 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 OSER1Q9NX31 292 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 CASTOR2A6NHX0 329 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 OR1I1O60431 355 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 SNRNP70P08621 437 aaKnown RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 RPL4P36578 427 aaKnown RBP4.89□□□□□ -1.63
VPS13D-214ENST00000620676 FADDQ13158 208 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 SLC36A3Q495N2 470 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 CYBRD1Q53TN4 286 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 B3GLCTQ6Y288 498 aa4.89□□□□□ -1.63
VPS13D-214ENST00000620676 C1QTNF6Q9BXI9 259 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms