RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 IFT88Q13099 833 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 RBBP5Q15291 538 aaKnown RBP13.74□□□□□ -0.21
UPF1-211ENST00000600868 UGT3A2Q3SY77 523 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 TUBB8Q3ZCM7 444 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 PHF19Q5T6S3 580 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 KANK2Q63ZY3 851 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 FRG2Q64ET8 278 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 CLEC6AQ6EIG7 209 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 DHRS13Q6UX07 377 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 RNF165Q6ZSG1 346 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 B3GNT8Q7Z7M8 397 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 CRLF3Q8IUI8 442 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 PLD3Q8IV08 490 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 CACTIN-AS1Q8N1I8 211 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 ANKRD53Q8N9V6 530 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 WDR20Q8TBZ3 569 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 FAM122AQ96E09 287 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 FAR2Q96K12 515 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 FRG2BQ96QU4 278 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 OR2A5Q96R48 311 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 KCNA7Q96RP8 456 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 ADGRE2Q9UHX3 823 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 PLCL2Q9UPR0 1127 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 TIMM22Q9Y584 194 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 A0A0J9YVX5 310 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 SERTM1A2A2V5 107 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 TMEM233B4DJY2 109 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 MANBAO00462 879 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 FFAR3O14843 346 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 GPR42O15529 346 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 SRPX2O60687 465 aaPredicted RBP13.73□□□□□ -0.21
UPF1-211ENST00000600868 EDF1O60869 148 aaKnown RBP13.73□□□□□ -0.21
UPF1-211ENST00000600868 ULK1O75385 1050 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 CHEK2O96017 543 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 PLA2G5P39877 138 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 HK2P52789 917 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 CYP4F3Q08477 520 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 ISXQ2M1V0 245 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 HES3Q5TGS1 186 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 MCATQ8IVS2 390 aaKnown RBP13.73□□□□□ -0.21
UPF1-211ENST00000600868 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.73□□□□□ -0.21
UPF1-211ENST00000600868 AFAP1L2Q8N4X5 818 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 AGBL5Q8NDL9 886 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 RCBTB1Q8NDN9 531 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 PIWIL2Q8TC59 973 aaKnown RBP13.73□□□□□ -0.21
UPF1-211ENST00000600868 USP7Q93009 1102 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 PRR11Q96HE9 360 aaPredicted RBP13.73□□□□□ -0.21
UPF1-211ENST00000600868 ZNF317Q96PQ6 595 aaPredicted RBP13.73□□□□□ -0.21
UPF1-211ENST00000600868 DEPDC7Q96QD5 511 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 STRADBQ9C0K7 418 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 ELOVL6Q9H5J4 265 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 PNPOQ9NVS9 261 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 PSD3Q9NYI0 1048 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 ZFP69BQ9UJL9 534 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 PPT2Q9UMR5 302 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 CLCA2Q9UQC9 943 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 AP1M2Q9Y6Q5 423 aa13.73□□□□□ -0.21
UPF1-211ENST00000600868 DMXL1Q9Y485 3027 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 CEP250Q9BV73 2442 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 ANKDD1BA6NHY2 528 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 SLCO1B7G3V0H7 640 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 H0YGG7 62 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 FOXE1O00358 373 aaPredicted RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 HCRTR1O43613 425 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 CLEC3AO75596 197 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 VIMP08670 466 aaKnown RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 PCNAP12004 261 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 FOLR1P15328 257 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 SERPINB3P29508 390 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 CSTF2P33240 577 aaKnown RBP eCLIP13.72□□□□□ -0.21
UPF1-211ENST00000600868 LSP1P33241 339 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 ARF3P61204 181 aaPredicted RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 PHEXP78562 749 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 C16orf72Q14CZ0 275 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 TCHHL1Q5QJ38 904 aaPredicted RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 MANEAQ5SRI9 462 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 FRMPD2BQ6IN97 320 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 FAM47EQ6ZV65 393 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 VN1R5Q7Z5H4 357 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 VN1R4Q7Z5H5 301 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 ALYREFQ86V81 257 aaKnown RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 TRPV3Q8NET8 790 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 HUS1BQ8NHY5 278 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 AGR3Q8TD06 166 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 ZNF473Q8WTR7 871 aaKnown RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 SELENOMQ8WWX9 145 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 RERGQ96A58 199 aaPredicted RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 TM4SF19Q96DZ7 209 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 ZNF285Q96NJ3 590 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 FCRL4Q96PJ5 515 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 CCT7Q99832 543 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 SYNPO2LQ9H987 977 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 ENAMQ9NRM1 1142 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 SIDT1Q9NXL6 827 aaKnown RBP13.72□□□□□ -0.21
UPF1-211ENST00000600868 VTI1BQ9UEU0 232 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 ADAM21Q9UKJ8 722 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 DNAJC15Q9Y5T4 150 aa13.72□□□□□ -0.21
UPF1-211ENST00000600868 MDC1Q14676 2089 aaKnown RBP13.71□□□□□ -0.21
UPF1-211ENST00000600868 ADAMTS20P59510 1910 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 LOC105369274A0A096LPK9 316 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms