RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 GPR62Q9BZJ7 368 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 CRISPLD1Q9H336 500 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 PDFQ9HBH1 243 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 RANGRFQ9HD47 186 aaPredicted RBP17.74■□□□□ 0.43
UPF1-210ENST00000600689 GKN1Q9NS71 199 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 PSORS1C1Q9UIG5 152 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 WNT9AO14904 365 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 STK16O75716 305 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 OAZ2O95190 189 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 EPN2O95208 641 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 CHRNB1P11230 501 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 SSTR4P31391 388 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 TNFSF8P32971 234 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 SOX6P35712 828 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 DOC2BQ14184 412 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 GANABQ14697 944 aaKnown RBP17.74■□□□□ 0.43
UPF1-210ENST00000600689 LINC00299Q6ZSB3 139 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 RNF180Q86T96 592 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 DNAJC22Q8N4W6 341 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 KIAA1958Q8N8K9 716 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 PEX13Q92968 403 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 SH3KBP1Q96B97 665 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 IL4I1Q96RQ9 567 aa17.74■□□□□ 0.43
UPF1-210ENST00000600689 MTERF1Q99551 399 aaKnown RBP17.74■□□□□ 0.43
UPF1-210ENST00000600689 SDHCQ99643 169 aaPredicted RBP17.74■□□□□ 0.43
UPF1-210ENST00000600689 H3BQ06 376 aaPredicted RBP17.73■□□□□ 0.43
UPF1-210ENST00000600689 J3KTA2 159 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 TNFRSF11BO00300 401 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 KRT6AP02538 564 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 KRT6BP04259 564 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 RPLP2P05387 115 aaKnown RBP17.73■□□□□ 0.43
UPF1-210ENST00000600689 ADRA2AP08913 450 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 SOX3P41225 446 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 MAGEA2P43356 314 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 KRT6CP48668 564 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 YBEYP58557 167 aaPredicted RBP17.73■□□□□ 0.43
UPF1-210ENST00000600689 ARPC4P59998 168 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 NEK5Q6P3R8 708 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 WDR36Q8NI36 951 aaKnown RBP17.73■□□□□ 0.43
UPF1-210ENST00000600689 PSKH2Q96QS6 385 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 TBC1D24Q9ULP9 559 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 PEX16Q9Y5Y5 336 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 LYVE1Q9Y5Y7 322 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 THSD7BQ9C0I4 1608 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 IGLV3-10A0A075B6K4 115 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 CLCA1A8K7I4 914 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 C9P02748 559 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 CDK1P06493 297 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 RHOCP08134 193 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 SPIBQ01892 262 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 HSPA14Q0VDF9 509 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 BAK1Q16611 211 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 FAM209AQ5JX71 171 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 ZZZ3Q8IYH5 903 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 FAM193BQ96PV7 902 aaPredicted RBP17.73■□□□□ 0.43
UPF1-210ENST00000600689 COPS8Q99627 209 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 SLC30A2Q9BRI3 323 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 CCM2Q9BSQ5 444 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 OR2B2Q9GZK3 357 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 IRF2BPLQ9H1B7 796 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 CLDN9O95484 217 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 IFI30P13284 250 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 PRKCAP17252 672 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 PTPN6P29350 595 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 CTXN3Q4LDR2 81 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 RSPO2Q6UXX9 243 aaPredicted RBP17.73■□□□□ 0.43
UPF1-210ENST00000600689 TP53I13Q8NBR0 393 aaPredicted RBP17.73■□□□□ 0.43
UPF1-210ENST00000600689 CRLS1Q9UJA2 301 aa17.73■□□□□ 0.43
UPF1-210ENST00000600689 PRRC2BQ5JSZ5 2229 aaKnown RBP17.72■□□□□ 0.43
UPF1-210ENST00000600689 FRMPD3Q5JV73 1810 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 EFCAB10A6NFE3 127 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 FAM227AF5H4B4 570 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 CPNE3O75131 537 aaKnown RBP17.72■□□□□ 0.43
UPF1-210ENST00000600689 WDR47O94967 919 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 FEN1P39748 380 aaKnown RBP17.72■□□□□ 0.43
UPF1-210ENST00000600689 CLDN8P56748 225 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 PTCHD3Q3KNS1 767 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 C10orf62Q5T681 223 aaPredicted RBP17.72■□□□□ 0.43
UPF1-210ENST00000600689 RNF219Q5W0B1 726 aaPredicted RBP17.72■□□□□ 0.43
UPF1-210ENST00000600689 LAX1Q8IWV1 398 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 ADGRE3Q9BY15 652 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 FBXO44Q9H4M3 255 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 RPS6KA6Q9UK32 745 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 MAGEB17A8MXT2 336 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 K7ERQ8 282 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 SNRPD2P62316 118 aaKnown RBP17.72■□□□□ 0.43
UPF1-210ENST00000600689 SP3Q02447 781 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 PTOV1Q86YD1 416 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 OR10G2Q8NGC3 310 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 NELL1Q92832 810 aa17.72■□□□□ 0.43
UPF1-210ENST00000600689 FAM172BPA6NC97 362 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 YY2O15391 372 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 SEMA3DO95025 777 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 EOMESO95936 686 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 ZNF7P17097 686 aaPredicted RBP17.71■□□□□ 0.43
UPF1-210ENST00000600689 RAB43Q86YS6 212 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 UBQLNLQ8IYU4 475 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 B3GNT7Q8NFL0 401 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 TMEM203Q969S6 136 aa17.71■□□□□ 0.43
UPF1-210ENST00000600689 MGLLQ99685 303 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms