RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 WDR37Q9Y2I8 494 aa13.65□□□□□ -0.22
LIG3-205ENST00000585941 WBP11Q9Y2W2 641 aaKnown RBP13.65□□□□□ -0.22
LIG3-205ENST00000585941 PCDHB14Q9Y5E9 798 aa13.65□□□□□ -0.22
LIG3-205ENST00000585941 CFAP20Q9Y6A4 193 aaKnown RBP13.65□□□□□ -0.22
LIG3-205ENST00000585941 COLEC10Q9Y6Z7 277 aa13.65□□□□□ -0.22
LIG3-205ENST00000585941 ELOVL7A1L3X0 281 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 ANKDD1BA6NHY2 528 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 PDZK1P1A8MUH7 402 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 FAM220BPB1ANY3 271 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 AKAP10O43572 662 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 SEMA3DO95025 777 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 SCELO95171 688 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 LRATO95237 230 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 SRFP11831 508 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 HOXB9P17482 250 aaPredicted RBP13.64□□□□□ -0.23
LIG3-205ENST00000585941 FASP25445 335 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 AKT2P31751 481 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 AQP4P55087 323 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 MRPS35P82673 323 aaKnown RBP13.64□□□□□ -0.23
LIG3-205ENST00000585941 MED21Q13503 144 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 SELPLGQ14242 412 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 CPTPQ5TA50 214 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 OR4F3Q6IEY1 312 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 IKBIPQ70UQ0 350 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 COMMD6Q7Z4G1 85 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 ANKFN1Q8N957 763 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 OR4K1Q8NGD4 311 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 LRTOMTQ8WZ04 291 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 COQ8BQ96D53 544 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 MTERF3Q96E29 417 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 DUSP26Q9BV47 211 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 KAT8Q9H7Z6 458 aaKnown RBP13.64□□□□□ -0.23
LIG3-205ENST00000585941 UBE2ZQ9H832 354 aaPredicted RBP13.64□□□□□ -0.23
LIG3-205ENST00000585941 YY1AP1Q9H869 796 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 CARS2Q9HA77 564 aaKnown RBP13.64□□□□□ -0.23
LIG3-205ENST00000585941 FGF22Q9HCT0 170 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 IMP3Q9NV31 184 aaKnown RBP13.64□□□□□ -0.23
LIG3-205ENST00000585941 ATAD3AQ9NVI7 634 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 ATP6V1HQ9UI12 483 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 BTNL2Q9UIR0 455 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 RAB26Q9ULW5 256 aa13.64□□□□□ -0.23
LIG3-205ENST00000585941 POM121BA6NF01 834 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 LATO43561 262 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 IGLV3-19P01714 112 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 MTHFD1P11586 935 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 DDX5P17844 614 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 GABRG2P18507 467 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 PPIBP23284 216 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 HRH2P25021 359 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 PTPN6P29350 595 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 PKLRP30613 574 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ACSL1P33121 698 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 DGKEP52429 567 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 REEP5Q00765 189 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ABHD18Q0P651 414 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 MLF2Q15773 248 aaPredicted RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 ADNP2Q6IQ32 1131 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 MICU2Q8IYU8 434 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 DTWD1Q8N5C7 304 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ZNF548Q8NEK5 533 aaPredicted RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 GPR156Q8NFN8 814 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 TTLQ8NG68 377 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 OR7A2PQ8NGA2 310 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 OR10A6Q8NH74 314 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 SNX19Q92543 992 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 GFM2Q969S9 779 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 FAM120BQ96EK7 910 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 PANX1Q96RD7 426 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 BHLHE41Q9C0J9 482 aaPredicted RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 MYNNQ9NPC7 610 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 USP36Q9P275 1121 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 CORO2BQ9UQ03 480 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 PCDHB11Q9Y5F2 797 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 HS3ST3A1Q9Y663 406 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 A0A1W2PPV9 198 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 SCN2BO60939 215 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 TIPRLO75663 272 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 CCNDBP1O95273 360 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 SEMA4FO95754 770 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 TGFB1P01137 390 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ZCCHC18P0CG32 403 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 NCK1P16333 377 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 GSTM2P28161 218 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 NUDT1P36639 197 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 GSTM5P46439 218 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ABATP80404 500 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 PRDX1Q06830 199 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 TDGQ13569 410 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 BLMHQ13867 455 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 CLCA4Q14CN2 919 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 RBBP5Q15291 538 aaKnown RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 RPE65Q16518 533 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ANO7Q6IWH7 933 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 ABRAXAS1Q6UWZ7 409 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 DNAJC14Q6Y2X3 702 aaPredicted RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 ARMCX6Q7L4S7 300 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 CALHM3Q86XJ0 350 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 C2orf73Q8N5S3 287 aaPredicted RBP13.63□□□□□ -0.23
LIG3-205ENST00000585941 PACRGLQ8N7B6 248 aa13.63□□□□□ -0.23
LIG3-205ENST00000585941 CDC26Q8NHZ8 85 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms