RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 FCRL4Q96PJ5 515 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 SLC29A3Q9BZD2 475 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 PITHD1Q9GZP4 211 aaPredicted RBP9.13□□□□□ -0.95
RFFL-210ENST00000582308 RHBGQ9H310 441 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 FARSBQ9NSD9 589 aaKnown RBP9.13□□□□□ -0.95
RFFL-210ENST00000582308 SOHLH2Q9NX45 425 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 ADAM21Q9UKJ8 722 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 FIS1Q9Y3D6 152 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 PCDHGA4Q9Y5G9 962 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 PCDHGA11Q9Y5H2 935 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 CCDC88CQ9P219 2028 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 SPTBN2O15020 2390 aa9.13□□□□□ -0.95
RFFL-210ENST00000582308 LOC105369274A0A096LPK9 316 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 LOC102723532A0A0G2JNH3 316 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 A0A0J9YVX5 310 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 H0YGG7 62 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 EDF1O60869 148 aaKnown RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 CRCPO75575 148 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 KCNK5O95279 499 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 STATHP02808 62 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 CTSBP07858 339 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 VIMP08670 466 aaKnown RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 KITP10721 976 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 CDK4P11802 303 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 PCNAP12004 261 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 FOLR1P15328 257 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 HMOX2P30519 316 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 CCKBRP32239 447 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 GRK3P35626 688 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 AHRP35869 848 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 MLLT3P42568 568 aaPredicted RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 HTR6P50406 440 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 NOVA1P51513 510 aaKnown RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 NEK2P51955 445 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 SEC24CP53992 1094 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 INHBCP55103 352 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 ARF3P61204 181 aaPredicted RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 RPS15AP62244 130 aaKnown RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 GNGT1P63211 74 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 TRA2AQ13595 282 aaKnown RBP eCLIP9.12□□□□□ -0.95
RFFL-210ENST00000582308 C16orf72Q14CZ0 275 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 ABRAXAS2Q15018 415 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 HIST2H2ACQ16777 129 aaPredicted RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 DEFB110Q30KQ9 67 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 FRG2Q64ET8 278 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 HIST2H2AA3Q6FI13 130 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 FRMPD2BQ6IN97 320 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 SCIMPQ6UWF3 145 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 VN1R4Q7Z5H5 301 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 CRLF3Q8IUI8 442 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 MCATQ8IVS2 390 aaKnown RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.12□□□□□ -0.95
RFFL-210ENST00000582308 CLYBLQ8N0X4 340 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 OR4N4Q8N0Y3 316 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 HUS1BQ8NHY5 278 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 USP7Q93009 1102 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 UBE2E3Q969T4 207 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 TMEM74Q96NL1 305 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 FRG2BQ96QU4 278 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 OR2A5Q96R48 311 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 MTERF1Q99551 399 aaKnown RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 ZFYVE21Q9BQ24 234 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 TUBB1Q9H4B7 451 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 PDE7BQ9NP56 450 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 FGFR1OP2Q9NVK5 253 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 MARCOQ9UEW3 520 aaPredicted RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 SNX6Q9UNH7 406 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 APOBEC2Q9Y235 224 aaKnown RBP9.12□□□□□ -0.95
RFFL-210ENST00000582308 TSC22D4Q9Y3Q8 395 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 DNAJC15Q9Y5T4 150 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 PTGDR2Q9Y5Y4 395 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 AP1M2Q9Y6Q5 423 aa9.12□□□□□ -0.95
RFFL-210ENST00000582308 MAGEB17A8MXT2 336 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 AGRPO00253 132 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 ZNF195O14628 629 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 HGSO14964 777 aaPredicted RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 P2RX6O15547 441 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 ULK1O75385 1050 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 CSO75390 466 aaKnown RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 TBX6O95947 436 aaPredicted RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 MT-CO3P00414 261 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 PDYNP01213 254 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 KRT6AP02538 564 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 KRT6BP04259 564 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 JUNP05412 331 aaKnown RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 MSL3P1P0C860 447 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 PIK3CBP42338 1070 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 KRT6CP48668 564 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 ARL4DP49703 201 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 CYP4F2P78329 520 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 IFT88Q13099 833 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 DDX39BQ13838 428 aaKnown RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 GPR19Q15760 415 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 ISXQ2M1V0 245 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 ZC3H12BQ5HYM0 836 aaKnown RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 HES3Q5TGS1 186 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 CGB2Q6NT52 195 aa9.11□□□□□ -0.95
RFFL-210ENST00000582308 MTERF4Q7Z6M4 381 aaKnown RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 ALYREFQ86V81 257 aaKnown RBP9.11□□□□□ -0.95
RFFL-210ENST00000582308 WDR75Q8IWA0 830 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms