RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SPARTQ8N0X7 666 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CPA6Q8N4T0 437 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 VN1R2Q8NFZ6 395 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 OR2T29Q8NH02 315 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 CDC26Q8NHZ8 85 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 WFIKKN2Q8TEU8 576 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 SH3KBP1Q96B97 665 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 DCUN1D5Q9BTE7 237 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 WRAP53Q9BUR4 548 aaKnown RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 NAA50Q9GZZ1 169 aaKnown RBP9.73□□□□□ -0.85
VPS53-220ENST00000576149 TPT1P8Q9HAU6 139 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 TM9SF3Q9HD45 589 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 BTNL2Q9UIR0 455 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 RPS6KA6Q9UK32 745 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ABCG2Q9UNQ0 655 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 MAPRE3Q9UPY8 281 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 ORC6Q9Y5N6 252 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 GMEB1Q9Y692 573 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 KCNE2Q9Y6J6 123 aa9.73□□□□□ -0.85
VPS53-220ENST00000576149 LILRB5O75023 590 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ITGAMP11215 1152 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ADH5P11766 374 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 MATN1P21941 496 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 GSTM2P28161 218 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ST8SIA6P61647 398 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 TOP3AQ13472 1001 aaPredicted RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 IL18R1Q13478 541 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 TUBA3CQ13748 450 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 VEZF1Q14119 521 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 BCL7AQ4VC05 210 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 SPIN4Q56A73 249 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 TCEAL5Q5H9L2 206 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 CPTPQ5TA50 214 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ALKBH2Q6NS38 261 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 CBLL1Q75N03 491 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 CEP68Q76N32 757 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 EIF3MQ7L2H7 374 aaKnown RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 CYP4Z1Q86W10 505 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 SYNPOQ8N3V7 929 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 FBLIM1Q8WUP2 373 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ZNF480Q8WV37 535 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 SGCDQ92629 289 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 NEIL2Q969S2 332 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 RAD9AQ99638 391 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 BLOC1S6Q9UL45 172 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 SLC27A6Q9Y2P4 619 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 C1orf226A1L170 272 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 HOXC11O43248 304 aaPredicted RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 SH3BGRLO75368 114 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 PRNPP04156 253 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 FABP3P05413 133 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 HTR1AP08908 422 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 NPPBP16860 134 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 AGXTP21549 392 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 IDSP22304 550 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 IGFBP5P24593 272 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 METAP1P53582 386 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 PNLIPRP1P54315 467 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 TMBIM6P55061 237 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 RPS13P62277 151 aaKnown RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 C16orf72Q14CZ0 275 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 TOMM20Q15388 145 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ZNF697Q5TEC3 545 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ANXA8L1Q5VT79 327 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 MED27Q6P2C8 311 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 GALNT18Q6P9A2 607 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 CFAP206Q8IYR0 622 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 CELF5Q8N6W0 485 aaKnown RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 PIK3C3Q8NEB9 887 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 SNX19Q92543 992 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 COQ8BQ96D53 544 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 BARD1Q99728 777 aaKnown RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 DPH2Q9BQC3 489 aaPredicted RBP9.72□□□□□ -0.85
VPS53-220ENST00000576149 SPATA9Q9BWV2 254 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 CHST8Q9H2A9 424 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 ETAA1Q9NY74 926 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 COQ6Q9Y2Z9 468 aa9.72□□□□□ -0.85
VPS53-220ENST00000576149 A0A1W2PPW3 197 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 MGAT4DA6NG13 374 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 TMX2-CTNND1H3BSU7 103 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 ZNF197O14709 1029 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 BCKDKO14874 412 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 MITFO75030 526 aaPredicted RBP9.71□□□□□ -0.85
VPS53-220ENST00000576149 EFNA1P20827 205 aaPredicted RBP9.71□□□□□ -0.85
VPS53-220ENST00000576149 ENPP1P22413 925 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 TIA1P31483 386 aaKnown RBP eCLIP9.71□□□□□ -0.85
VPS53-220ENST00000576149 IRS1P35568 1242 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 HPCAL1P37235 193 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 MAGEA8P43361 318 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 STT3AP46977 705 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 DAPP51397 102 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 ARHGDIAP52565 204 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 TBPL1P62380 186 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 VLDLRP98155 873 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 GTF2H3Q13889 308 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 HKDC1Q2TB90 917 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 FGD3Q5JSP0 725 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 KDM4DQ6B0I6 523 aa9.71□□□□□ -0.85
VPS53-220ENST00000576149 GTF2IRD2BQ6EKJ0 949 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms