RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HERC3Q15034 1050 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 KIAA0040Q15053 153 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 PDCD4Q53EL6 469 aaKnown RBP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 CACHD1Q5VU97 1274 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 ADNP2Q6IQ32 1131 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 ZNF438Q7Z4V0 828 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 VN1R5Q7Z5H4 357 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 TRIM73Q86UV7 250 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 ANKRD53Q8N9V6 530 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 OR6C4Q8NGE1 309 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 CHTF18Q8WVB6 975 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 RSC1A1Q92681 617 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 APIPQ96GX9 242 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 BRINP2Q9C0B6 783 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 EPB41L1Q9H4G0 881 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 SDR39U1Q9NRG7 319 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 TMEM45AQ9NWC5 275 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 GMEB2Q9UKD1 530 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 POMT2Q9UKY4 750 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 PADI4Q9UM07 663 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 KLHL20Q9Y2M5 609 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 TP53BP1Q12888 1972 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 A0A0C4DFX4 3053 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 OR2A25A4D2G3 310 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 TRIM38O00635 465 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 HNRNPCL1O60812 293 aaKnown RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 CLEC3AO75596 197 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 MYO1DO94832 1006 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 UNC5CO95185 931 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 ETHE1O95571 254 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 TGFB1P01137 390 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 PRPS2P11908 318 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 COX4I1P13073 169 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 EZRP15311 586 aaKnown RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 CALB2P22676 271 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 BCL6P41182 706 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 CAPZBP47756 277 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 MNAT1P51948 309 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 RPS15AP62244 130 aaKnown RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 ACSM2AQ08AH3 577 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 TBL3Q12788 808 aaKnown RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 CUL3Q13618 768 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 NR1D2Q14995 579 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 NR0B2Q15466 257 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 MAPRE2Q15555 327 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 AGKQ53H12 422 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 SPIN4Q56A73 249 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 ACSM2BQ68CK6 577 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 FCRL6Q6DN72 434 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 LAIR1Q6GTX8 287 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 PLD3Q8IV08 490 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 FAM9CQ8IZT9 166 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 FAM181AQ8N9Y4 354 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 MFSD9Q8NBP5 474 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 TRPV3Q8NET8 790 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 RP9Q8TA86 221 aaKnown RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 THAP11Q96EK4 314 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 FCRL1Q96LA6 429 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 GTPBP2Q9BX10 602 aaKnown RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 RAB33BQ9H082 229 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 ABCG4Q9H172 646 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 SEMA6CQ9H3T2 930 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 AHSPQ9NZD4 102 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 ZIM2Q9NZV7 527 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 RUVBL1Q9Y265 456 aaKnown RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 POLR3HQ9Y535 204 aaPredicted RBP13.11□□□□□ -0.31
CCDC40-209ENST00000573474 AP1M2Q9Y6Q5 423 aa13.11□□□□□ -0.31
CCDC40-209ENST00000573474 SIGLEC6O43699 453 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 PCDHGA12O60330 932 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 SLC22A3O75751 556 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 G6PDP11413 515 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 BCKDHAP12694 445 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 PNLIPP16233 465 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 ENGP17813 658 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 MAGP20916 626 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 ALDH4A1P30038 563 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 LSSP48449 732 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 RASSF2P50749 326 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 HNRNPH2P55795 449 aaKnown RBP13.1□□□□□ -0.31
CCDC40-209ENST00000573474 NME5P56597 212 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 CYP4F2P78329 520 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 CYLC2Q14093 348 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-209ENST00000573474 ZIC1Q15915 447 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 SPRED3Q2MJR0 410 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 PLA2G2CQ5R387 149 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 DEPDC1Q5TB30 811 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 KHDRBS2Q5VWX1 349 aaKnown RBP13.1□□□□□ -0.31
CCDC40-209ENST00000573474 NOXRED1Q6NXP6 359 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 IRGCQ6NXR0 463 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 FBXO42Q6P3S6 717 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 PAOXQ6QHF9 649 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 CYP20A1Q6UW02 462 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 LIX1Q8N485 282 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 BAHD1Q8TBE0 780 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-209ENST00000573474 CREB3L4Q8TEY5 395 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 AHCYL2Q96HN2 611 aaKnown RBP13.1□□□□□ -0.31
CCDC40-209ENST00000573474 APOLD1Q96LR9 279 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 COL25A1Q9BXS0 654 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-209ENST00000573474 MS4A8Q9BY19 250 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms